RnoEX0037756 @ rn6
Exon Skipping
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12058152-12063320:-
Coord C1 exon
chr3:12063209-12063320
Coord A exon
chr3:12058563-12058661
Coord C2 exon
chr3:12058152-12058268
Length
99 bp
Sequences
Splice sites
3' ss Seq
TAACCAGATTTCTTTTCCAGATG
3' ss Score
8.05
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
CCTTGGGAGCCCCAATGTTTCTGCTGTAATTTCCCTCACGAAGCTGTGTGTGCAGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACTGATGCCGGCGTCTTGCTAGTGGATG
Seq A exon
ATGACCTCCCATCCGTGCCCGTGTTTGACAGAACTCTACCCGTGAAGCAGATCCACGTGCTTGAGACTCTGGACCTTCTGGTTCTCAGAGCAGACAAAG
Seq C2 exon
GGAAAGATGCCCGCCTCTTTGTCTTTCGGCTGAGTGCGGTGCAGAAAGGCCTTGATGGCAGGCAGACCGGAAGGAGCAGATCTGACTGCCGAGAAAACAAGTTGGAGAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044-'37-36,'37-35,41-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.275
Domain overlap (PFAM):
C1:
PF0078017=CNH=PU(7.2=57.9)
A:
PF0078017=CNH=FE(10.8=100)
C2:
PF0078017=CNH=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCTCACGAAGCTGTGTG
R:
TCAGATCTGCTCCTTCCGGTC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]