BtaEX0015387 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006948 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr11:98114101-98123552:+
Coord C1 exon
chr11:98114101-98114212
Coord A exon
chr11:98122982-98123080
Coord C2 exon
chr11:98123436-98123552
Length
99 bp
Sequences
Splice sites
3' ss Seq
TAACCAGGCTTCTTTTCCAGACG
3' ss Score
6.48
5' ss Seq
AAGGTGCTA
5' ss Score
2.48
Exon sequences
Seq C1 exon
CCTTGGGAGCCACAGTGTTTCTGCAGTAACTTCCCTCATGAGGCCGTGTGTGCGGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACTGATGCCGGCGTCTTGCTAGTGGATG
Seq A exon
ACGACCTCCCATCAGTGCCCGTGTTTGACAAGACTCTGCCCGTGAAGCAGATGCATGTGCTGGAGGCGCTGGACCTTCTGATCCTCAGAGCAGACAAAG
Seq C2 exon
GGAAAGATGCCCGCATCTTTGTCTTCAGGCTGAGCGCTGTGCAGAGGGGCATCGAGGGCAAGCAAGCCGTGAAGGGCAAGTGTGACTGTAGAGAAAACAAGCTCGAGAAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006948_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PU(7.2=57.9)
A:
PF0078017=CNH=FE(10.8=100)
C2:
PF0078017=CNH=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATGAGGCCGTGTGTG
R:
ACAGTCACACTTGCCCTTCAC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development