HsaEX0034174 @ hg38
Exon Skipping
Gene
ENSG00000076826 | CAMSAP3
Description
calmodulin regulated spectrin associated protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr19:7595902-7606393:+
Coord C1 exon
chr19:7595902-7596150
Coord A exon
chr19:7605226-7605479
Coord C2 exon
chr19:7606271-7606393
Length
254 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTATGCCCCCACAGAGC
3' ss Score
10.62
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
GCGGCGGTAGCAGCAGCGGGCCCGGCTGGGGCGCGAGCGCGGCGCAGCCCAGCCCAGCCCAGTCCGAGCGCGGACCCGGCGCCCGCAGCCCCGGCGCCGCCATGGTGGAGGCGGCGCCCCCCGGGCCCGGGCCGCTGCGGAGGACCTTTCTAGTGCCCGAGATCAAGTCGCTGGACCAGTACGATTTCTCGCGGGCCAAGGCGGCGGCCAGCCTGGCGTGGGTGCTGCGGGCCGCGTTCGGGGGCGCAG
Seq A exon
AGCACGTGCCCCCGGAGCTGTGGGAGCCCTTCTATACCGACCAGTACGCGCAGGAGCATGTGAAGCCCCCGGTGACACGGCTGCTGCTCTCAGCCGAGCTCTACTGCAGAGCCTGGCGCCAGGCACTGCCACAGCTTGAAACACCCCCCAACCCCTCTGCACTGCTGGCCCTGCTGGCGCGGAGGGGCACAGTGCCTGCTTTGCCCGAGCGCCCGGTGCGCGAGGCCGACCTGAGGCACCAGCCCATTCTCATG
Seq C2 exon
GGAGCCCACCTAGCTGTCATTGATGCCCTCATGGCTGCCTTTGCCTTCGAGTGGACAAAGACCCTGCCAGGTCCCTTGGCCCTGACCAGCTTGGAGCACAAGCTGCTTTTCTGGGTGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCGGAGGACCTTTCTAGT
R:
GTCCACCCAGAAAAGCAGCTT
Band lengths:
236-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development