BtaEX0006956 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17671971-17679634:+
Coord C1 exon
chr7:17671971-17672118
Coord A exon
chr7:17678881-17679134
Coord C2 exon
chr7:17679512-17679634
Length
254 bp
Sequences
Splice sites
3' ss Seq
CCTCCACTCCGCCCCCGCAGAGC
3' ss Score
10.6
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
ATGGTGGAGGCGGCGCCCCCGGGGCCCGGGCCGCTGCGGAGGACCTTCCTGGTGCCCGAGATCAAGTCGCTGGACCAGTACGATTTCTCGCGGGCCAAGGCGGCGGCGAGCCTGGCGTGGGTGCTGCGGGCCGCATTCGGGGGCGCAG
Seq A exon
AGCATGTGCCCTCGGAGCTGTGGGAGCCCTTCTACACGGATCAGTACGCCCAGGAGCATGTGAAGCCCCCGGTGACACGGCTGCTGTTCTCGGCCGAGCTGTACTGCCGGGCCTGGCGCCAGGCGCTGCCGCAGCTCGAAGCACCCCCTAGCCCCTCTGCGCTTCTGGCATTGCTGGCACGGAGGGGCACAGTGCCTGCGCTGCCCGAGCGCCCGGTGCAGGAGGCCGACCTGAGGCACCAGCCTATCCTCATG
Seq C2 exon
GGAGCCCATCTAGCTGTCATTGATGCCCTCATGGTTGCCTTCGCCTTCGAGTGGACAAAGACACTGCCTGGTCCCTTGGCCCTAGCCAGCTTGGAGCACAAGCTCCTTTTCTGGGTAGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356-'0-5,'0-2,1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCGGAGGACCTTCC
R:
CGTGTCTACCCAGAAAAGGAGC
Band lengths:
240-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development