MmuEX6034126 @ mm9
Exon Skipping
Gene
ENSMUSG00000044433 | 2310057J16Rik
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3587450-3598808:+
Coord C1 exon
chr8:3587450-3587959
Coord A exon
chr8:3597842-3598095
Coord C2 exon
chr8:3598686-3598808
Length
254 bp
Sequences
Splice sites
3' ss Seq
TGTGCCCCTCCCCAATGCAGAGC
3' ss Score
9.33
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
GCAGCCCTTCCCTCATCCGCCATCACTGCCGCCCTTTGCAGCAGGAGGACCTATGGAAGCTTTAATGTCAGTGGGGACCCATGTGGACCCAGGAGCCAGAGAGAACTGAGTCCAATCTGGGGGCGGGGCGCACCTGGGTTCCGCCTTGGGGCGGGGTCGACGCCGCGTCGCCAGCGCGCTCGACCGCACCTGGTTCAGCGGCGCCTCAGCAGCTTTATTAGTAACAGCAGCAGCCGCGGCGGCAACCCGATTCGGGGTGGCGGAGGCTCGGCAGCAGCGCAGCGCAGCGCAGCGCACGCAGCCCAGCCCATCAGAGCGCGCGGACCCGGGCGGCCGTAACCCCGGCGTCGCCATGGTGGAAGCGGCGCCCGCAGGGTCCGGGCCACTGCGGAGGACTTTCCTGGTCCCCGAGATCAAGTCTTTGGACCAGTACGATTTCTCTCGAGCCAAGGCGGCGGCGAGTCTGGCGTGGGTGCTGCGGGCCGCATTCGGGGGAGCAG
Seq A exon
AGCATGTGCCTCCGGAGCTGTGGGAACCCTTCTACACCGATCAGTACGCACAGGAGCACGTGAAGCCCCCAGTGACGCGGCTGCTGCTCTCTGCGGAACTATACTGTCGGGCCTGGCGCCAGGCACTGCCACAGCTCGAGCCATCCCCCAGTCCCTCTGCTCTGTTGGCCTTGCTGGCGAGGAGGGGCACGGTGCCTTCACTGCCTGAGCACCCAGTGCGCGAGGCTGACCTGAAACACCAGCCAATTCTCATG
Seq C2 exon
GGAGCCCACCTAGCTGTCATCGATGCTCTCATGGTTGCCTTCTCATTTGAGTGGACAAAGACACTACCTGGTCCCTTGGCTCTGAGCAGCTTGGAGCACAAACTCCTTTTCTGGGTAGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433-'2-2,'2-0,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGTAACAGCAGCAGCCGC
R:
ATCGATGACAGCTAGGTGGGC
Band lengths:
308-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: