RnoEX0016557 @ rn6
Exon Skipping
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2134022-2148435:+
Coord C1 exon
chr12:2134022-2134282
Coord A exon
chr12:2144453-2144706
Coord C2 exon
chr12:2148297-2148435
Length
254 bp
Sequences
Splice sites
3' ss Seq
TGTGCCCCTCCCCAATGCAGAGC
3' ss Score
9.33
5' ss Seq
ATGGTATGC
5' ss Score
7.14
Exon sequences
Seq C1 exon
CGGCCGCGGCGGCAACCCGGATCGTGGTGGCGGAGGCTCTGCAGCCGCGCAGCGCAGCGCAGCCCAGCCCATCAGAGCGCGCGGACCCAGGCGGCCGTAGCCCCGGCGTCGCCATGGTGGAAGCGGCGCCCGCGGGGTCCGGGCCACTGCGGAGGACTTTCTTGGTCCCCGAGATCAAGTCATTGGACCAGTACGATTTCTCTAGAGCCAAGGCGGCGGCGAGTCTGGCGTGGGTGCTGCGGGCCGCATTCGGGGGAGCAG
Seq A exon
AGCATGTGCCCCCGGAGCTGTGGGAACCCTTCTACACCGACCAGTACGCACAGGAGCATGTGAAGCCCCCAGTGACGCGGCTGCTGCTCTCTGCAGAACTCTACTGCCGGGCCTGGCGTCAGGCACTGCCACAGCTCGAGCCATCCCCCAGCCCCTCTGCACTGCTGGCCTTGCTGGCGAGGAGGGGCACGGTGCCCTCGCTACCTGAGCACCCAGTGCGTGAGGCTGACCTGAAACACCAGCCAATCCTCATG
Seq C2 exon
ATTCGATACCGCAAGGACCGTGCCATTGCCCGGAGGGCCCCCTGCTTTCCAAATGTGACTACCCTTCAGGACCTGGCCAGTGGAGCAGCACTGGCTGCCACCATCCACTGCTATTGTCCCCAGCTATTACGACTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986_MULTIEX1-1/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.071 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF119713=CAMSAP_CH=PU(48.2=85.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACCCGGATCGTGGTG
R:
TCACATTTGGAAAGCAGGGGG
Band lengths:
308-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]