HsaEX0049967 @ hg38
Exon Skipping
Gene
ENSG00000126856 | PRDM7
Description
PR/SET domain 7 [Source:HGNC Symbol;Acc:HGNC:9351]
Coordinates
chr16:90056566-90061519:-
Coord C1 exon
chr16:90061452-90061519
Coord A exon
chr16:90060341-90060623
Coord C2 exon
chr16:90056566-90058534
Length
283 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTGCCTTGACCCCAGGTA
3' ss Score
8.89
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATCACCAAGGGGAGAAACTGCTATGAGTATGTGGATGGAAAAGATAAATCCTCGGCCAACTGGATGAG
Seq A exon
GTATGTGAACTGTGCCCGGGATGATGAAGAGCAGAACCTGGTGGCCTTCCAGTACCACAGGCAGATCTTCTATAGAACCTGCCGAGTCATTAGGCCAGGCTGTGAACTGCTGGTCTGGTCTGGGGATGAGTATGGCCAGGAACTGGGCATCAGATCTTCTATAGAACCTGCCGAGTCATTAGGCCAGGCTGTGAACTGCTGGTCTGGTATGGGGATGAGTATGGCCAGGAACTGGGCATCAAGTGGGGCAGCAAGTGGAAGAAAGAGCTCATGGCAGGGAGAG
Seq C2 exon
AACCAAAGCCAGAGATCCATCCATGTCCCTCATGCTGTCTGGCCTTTTCAAGTCAAAAATTTCTCAGTCAACATGTGGAACGCAATCACTCCTCTCAGAACTTCCCAGGACCATCTGCAAGAAAACTTCTCCAACCAGAGAATCCCTGCCCAGGGGATCAGAATCAGGAGCGGCAATATTCTGATCCACGCTGCTGTAATGACAAAACCAAAGGTCAAGAGATCAAAGAAAGGTCCAAACTCTTGAATAAAAGGACATGGCAGAGGGAGATTTCAAGGGCCTTTTCTAGCCCACCCAAAGGACAAATGGGGAGCTCTAGAGTGGGAGAAAGAATGATGGAAGAAGAGTCCAGAACAGGCCAGAAAGTGAATCCAGGGAACACAGGCAAATTATTTGTGGGGGTAGGAATCTCAAGAATTGCGAAAGTCAAATATGGAGAGTGTGGGCAAGGTTTCAGTGATAAGTCAGATGTTATTACACACCAAAGGACACACACAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126856_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.395
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCCTCGGCCAACTGGATG
R:
GCCCTTGAAATCTCCCTCTGC
Band lengths:
303-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development