HsaEX6033426 @ hg19
Exon Skipping
Gene
ENSG00000143379 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:10761]
Coordinates
chr1:150902443-150913904:+
Coord C1 exon
chr1:150902443-150902594
Coord A exon
chr1:150912416-150912450
Coord C2 exon
chr1:150913805-150913904
Length
35 bp
Sequences
Splice sites
3' ss Seq
AGAGTTCTTCTCGTCCATAGGTG
3' ss Score
8.95
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGCAGTGACTAATTGTGAGTCTTTGGTGAAGGACTTCTACTCCAAGCTGGGACTACAATACCGGGACAGTAGCTCTGAGGACGAATCTTCCCGGCCTACAGAAATAATTGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAG
Seq A exon
GTGATGCTGGGAGCAGAACTCCAAAAGACCAGAAG
Seq C2 exon
CTCCGTGAAGCTATGGCTGCCTTAAGAAAGTCAGCTCAAGATGTTCAGAAGTTCATGGATGCTGTCAACAAGAAGAGCAGTTCCCAGGATCTGCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143379-'13-11,'13-10,15-11=AN
Average complexity
A_S
Mappability confidence:
89%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.511 A=1.000 C2=0.470
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PD(44.3=76.5),PF094815=CRISPR_Cse1=PD(46.3=74.5)
A:
PF094815=CRISPR_Cse1=FE(7.9=100)
C2:
PF094815=CRISPR_Cse1=PD(23.0=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTAGCTCTGAGGACGA
R:
ACTTTCTTAAGGCAGCCATAGCT
Band lengths:
120-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)