BtaEX6015139 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19861049-19873780:-
Coord C1 exon
chr3:19873614-19873780
Coord A exon
chr3:19861590-19861624
Coord C2 exon
chr3:19861049-19861148
Length
35 bp
Sequences
Splice sites
3' ss Seq
ACTCAATTTTTCTTATCTAGGTG
3' ss Score
9.99
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTGTTCCAATATTAGGGCAGTGACTAACTGTGAGTCTTTGGTGAAGGACTTTTATTCCAAACTGGGACTACAGTACCGGGACAGCAGCTCTGAAGATGAAGCTTCCCGGCCTACAGAAATAATTGAGATTCCTGATGAAGACGATGATGTCCTTAGTATTGATTCAG
Seq A exon
GTGATGCTGGGAACAGAACTCCAAAAGACCAGAAG
Seq C2 exon
CTCCGTGAAGCTATGGCTGCCTTAAGAAAATCGGCTCAAGATGTCCAGAAGTTCATGGATGCTGTCAACAAGAAGAGTAATTCCCAGGATCTACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098-'11-9,'11-8,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=1.000 C2=0.559
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGCAGCTCTGAAGATG
R:
GCCGATTTTCTTAAGGCAGCC
Band lengths:
125-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]