HsaEX6033426 @ hg38
Exon Skipping
Gene
ENSG00000143379 | SETDB1
Description
SET domain bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr1:150929967-150941371:+
Coord C1 exon
chr1:150929967-150930118
Coord A exon
chr1:150939940-150939974
Coord C2 exon
chr1:150941329-150941371
Length
35 bp
Sequences
Splice sites
3' ss Seq
AGAGTTCTTCTCGTCCATAGGTG
3' ss Score
8.95
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGCAGTGACTAATTGTGAGTCTTTGGTGAAGGACTTCTACTCCAAGCTGGGACTACAATACCGGGACAGTAGCTCTGAGGACGAATCTTCCCGGCCTACAGAAATAATTGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAG
Seq A exon
GTGATGCTGGGAGCAGAACTCCAAAAGACCAGAAG
Seq C2 exon
CTCCGTGAAGCTATGGCTGCCTTAAGAAAGTCAGCTCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143379-'15-16,'15-15,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.505 A=1.000 C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTAGCTCTGAGGACGA
R:
ACTTTCTTAAGGCAGCCATAGCT
Band lengths:
120-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains