RnoEX0079905 @ rn6
Exon Skipping
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196516339-196524344:-
Coord C1 exon
chr2:196524193-196524344
Coord A exon
chr2:196518056-196518090
Coord C2 exon
chr2:196516339-196516438
Length
35 bp
Sequences
Splice sites
3' ss Seq
GAAGTTCTTTTCTTCCATAGGTG
3' ss Score
10.06
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAAGTGACTAATTGTGAGTCTTTGGTGAAGGATTTCTACTCTAAGCTGGGATTACAGTATCATGACAGTAGCTCTGACGATGAAGCTTCCCAGCCTACAGAGATAATCGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAG
Seq A exon
GTGATGCTGGGAGCAGAACGCCAAAAGATCAGAAG
Seq C2 exon
CTTCGTGAAGCTATGGCTGCCTTAAGAAAATCAGCTCAAGATGTCCAGAAGTTCATGGATGCTGTGAATAAGAAAAGCAGTTCTCAAGATCTACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143-'11-5,'11-4,12-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.434
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGACGATGAAGCTTCCC
R:
AGCTGATTTTCTTAAGGCAGCCA
Band lengths:
117-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]