MmuEX6072540 @ mm10
Exon Skipping
Gene
ENSMUSG00000015697 | Setdb1
Description
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Coordinates
chr3:95347996-95354693:-
Coord C1 exon
chr3:95354542-95354693
Coord A exon
chr3:95349839-95349873
Coord C2 exon
chr3:95347996-95348095
Length
35 bp
Sequences
Splice sites
3' ss Seq
GAAGTTCTTTTCTTTCATAGGTG
3' ss Score
9.05
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAAGTGACTAACTGTGAGTCTTTGGTGAAGGATTTCTACTCTAAGCTGGGACTACAGTATCATGACAGTAGCTCTGAGGATGAAGCTTCCCGGCCCACAGAGATCATTGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAG
Seq A exon
GTGATGCTGGGAGCAGAACTCCAAAAGACCAGAAG
Seq C2 exon
CTTCGTGAAGCTATGGCTGCCTTAAGAAAATCAGCTCAAGATGTCCAGAAGTTCATGGATGCTGTCAACAAGAAAAGCAGTTCTCAAGATCTACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015697-'7-9,'7-7,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=1.000 C2=0.382
Domain overlap (PFAM):
C1:
PF072276=DUF1423=PD(31.3=69.2)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000015841fB3649
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCCACAGAGATCATTGAG
R:
ACAGCATCCATGAACTTCTGGAC
Band lengths:
126-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types