DreEX0065554 @ danRer10
Exon Skipping
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22103914-22104776:-
Coord C1 exon
chr16:22104616-22104776
Coord A exon
chr16:22104497-22104540
Coord C2 exon
chr16:22103914-22104208
Length
44 bp
Sequences
Splice sites
3' ss Seq
CATTGTGTTTTTCTACACAGTGG
3' ss Score
8.34
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
GTCTGTGGTTCAGTGTGAAGCTCTGGTGAAGGAAGTGTACAGTAACATGGGTTTAGTGTATCGTGAAAGCAGCTCAGATGATGAGGGAGGCAAGGCAAACCCTTCTGAGGTCATTGAGATCGATGATGATGATGACGATGATGTCATTGCTGTGGGATGTT
Seq A exon
TGGTTCCTCCCAAGAAGAGTTTAACTCAAGCCAAGGACCCAGCG
Seq C2 exon
CTTAAGGAGGCTTCAGCTGCCCTTCAAAGAACATCTCAGCAGGTGCAGAACCTGGCTCAGACTGTCAACAGAACGGCCCAATCAGGGGTCACTACACCAGTTAAAACAGGGGGCCCTCCCGGACAAGGTCCTCTAGCTGTTCCAGCAGTGTTTATGTCCTCAGCCCCAAGAAACACGCCCACTCAACCAAACCCTAATATAAAACAGGACAGTATCAAGATAAACATGACGCTTTTGGGTAAAAAACGAACCAAGACGTGGCATCGTGGAACACTTGTTGCCATCAAACAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021-'11-12,'11-10,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=0.533 C2=0.737
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF150571=DUF4537=PU(17.6=21.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAACCCTTCTGAGGTCA
R:
TGACAGTCTGAGCCAGGTTCT
Band lengths:
136-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]