HsaEX6063627 @ hg19
Exon Skipping
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:445]
Coordinates
chr9:135206664-135211902:-
Coord C1 exon
chr9:135211683-135211902
Coord A exon
chr9:135209995-135210114
Coord C2 exon
chr9:135206664-135206835
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACTCTAAATGATCTTACAGGTA
3' ss Score
7.55
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
GTTCGGCGTTGGGCTATCTTGACTGCAAGAAACTTGGGGAAAGTGGACAGAGATGATTATTATGACTTACAAGAAGTTTTACTTTGCCTTTTTAAAGTCATTGAGTTGGGGCTTTTAGAGAGTCCAGACATTTATACTTCTTCTGTCCTAGAGAAGGGTAAACTGATTCTTCTGCCCTCACACATGTATGATACTACCAACTACAAAAGCTATTGGTTAG
Seq A exon
GTATTTGCATGTTGCTGACCATTCTTGAGGAACAAGCCATGGATTCCCTGTTGTTGGGCTCAGACAAACAAAATGATTTTATGCAATCGATACTTCACACTATGGAGAGGGAAGCAGATG
Seq C2 exon
ATGATAGTGTGGATCCTTTCTGGCCAGCGTTACACTGTTTTATGGTGATTCTGGATCGCCTTGGATCTAAGGTCTGGGGTCAACTTATGGATCCTATTGTGGCATTTCAAACCATTATCAACAACGCAAGCTACAATAGAGAGATCCGACATATACGGAACAGCTCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290-'8-12,'8-10,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127262=SEN1_N=FE(28.0=100)
A:
PF127262=SEN1_N=FE(15.3=100)
C2:
PF139001=GVQW=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGGGCTATCTTGACTGCA
R:
AAAACAGTGTAACGCTGGCCA
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)