GgaEX1052022 @ galGal4
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr17:6511350-6513136:-
Coord C1 exon
chr17:6512917-6513136
Coord A exon
chr17:6512515-6512634
Coord C2 exon
chr17:6511350-6511521
Length
120 bp
Sequences
Splice sites
3' ss Seq
GAAAGGTTGTCTTCTTGCAGGTA
3' ss Score
7.45
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATTCGTCGTTGGGCCATCCTGACAGCAAGGAATTTAGGGAAGGTTGACAGGGATGATTACTATGACTTACAGGAAGTGTTGACTTGCTTGTTTAAAGTTATTGAACTGGGGCTTTTTGAGAGTCCAGATATTTACAGATCTTCAGTGATTGAAAAGGGGAAACTCATTCTTCTGCCATCCCATTTATATGATAATAGCAACTACAAGAACTATTGGCTAG
Seq A exon
GTATTTGTATGCTGCTAACAGTGCTGGAAGAGCAAGCTATGGACTCCTTGTTACTGGGCCCAGACAAACAAAATGACTTCATGCAGTCTATACTTCACACCATGGAGAAAGAAGCAGATG
Seq C2 exon
ATGATTCCACTGACCCCTTCTGGCCAGCACTGCATTGTTTCATGGTTATTTTGGATCAGCTTGGATCTAAAGTATGGGGTCAGCTTATTGATCCTGTCCAGGCCTTTCAAACCATTATCAACAGTGTGAGCTACAACAATGAAATAAAGAATATACGCAATAACTTTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661-'13-9,'13-7,14-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCCTGACAGCAAGGAAT
R:
ATGAAACAATGCAGTGCTGGC
Band lengths:
251-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]