RnoEX0079945 @ rn6
Exon Skipping
Gene
ENSRNOG00000013491 | Setx
Description
senataxin [Source:RGD Symbol;Acc:1565575]
Coordinates
chr3:7695515-7698119:+
Coord C1 exon
chr3:7695515-7695734
Coord A exon
chr3:7696377-7696496
Coord C2 exon
chr3:7697948-7698119
Length
120 bp
Sequences
Splice sites
3' ss Seq
AAACTGGGATAATCTTACAGGTA
3' ss Score
4.71
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
GTTCGGCGATGGGCTATTCTGACTGCAAGAAACCTGGGGAAGGTGGACAGAGATGACTATTATGACTTACAGGAAGTTTTAACTTGCCTTTTTAAAGTCATTGAATTGGGGCTTTTGGAAAGTCCAGACATTTACACATCTTCTGTGCTTGAAAAAGGCAAACTGATCCTTTTGCCTGCACACATGTATGATACTACCAACTACAAAAACTATTGGCTAG
Seq A exon
GTATTTGCATGTTGTTGACTATTCTTGAGGAGCAAGCCATGGATTCACTGTTGCTGGGTTCAGACAAACAAAATGATTTTATGCAATCAATTCTTCACACCATGGAGAAGCAATCGGATG
Seq C2 exon
ATGACAGCATGGATCCTTTTTGGCCAGCGTTACACTGTTTCATGGTGATTCTTGATCGCCTTGGATCTAAGGTGTGGGGTCAACTTATTGACCCTATTGAAGCATTTCAAACCATCATTAACAACGAGAGCTACAACAGAGAGATCCAGAATATACGGAACAGCTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013491_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGATGGGCTATTCTGACTG
R:
ACAGTGTAACGCTGGCCAAAA
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]