MmuEX0041883 @ mm9
Exon Skipping
Gene
ENSMUSG00000043535 | Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:28994740-28999581:+
Coord C1 exon
chr2:28994740-28994959
Coord A exon
chr2:28995789-28995908
Coord C2 exon
chr2:28999410-28999581
Length
120 bp
Sequences
Splice sites
3' ss Seq
AAACTGGAATAATCTTACAGGTA
3' ss Score
4.45
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
GTTCGGCGATGGGCTATTCTGACTGCAAGAAACCTGGGGAAGGTGGACAGAGATGACTATTATGACTTACAGGAAGTTTTAACTTGCCTTTTTAAAGTCATTGAGCTGGGGCTTTTGGAAAGTCCAGACATTTACACATCTTCTGTGCTTGAAAAAGGCAAACTGATCCTTTTGCCTGCACACATGTATGATACTACCAACTACAAAAACTATTGGCTAG
Seq A exon
GTATTTGCATGTTGTTGACTATTCTTGAGGAGCAAGCCATGGATTCACTGTTGCTGGGCTCAGACAAGCAAAATGATTTTATGCAATCAATTCTTCACACCATGGAGAAGCAATCGGATG
Seq C2 exon
ATGATAGCATGGATCCTTTTTGGCCAGCATTACACTGTTTCATGGTGATTCTTGATCGCCTTGGATCTAAGGTATGGGGTCAACTTATTGACCCTATTGAAGCATTTCAAACCATCATTAACAACGAGAGCTACAACAGAGAGATCCAGAATATACGGAACAGCTCCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043535_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGATGGGCTATTCTGACTG
R:
TGGCCAAAAAGGATCCATGCT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: