HsaEX6063627 @ hg38
Exon Skipping
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr9:132331277-132336515:-
Coord C1 exon
chr9:132336296-132336515
Coord A exon
chr9:132334608-132334727
Coord C2 exon
chr9:132331277-132331448
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACTCTAAATGATCTTACAGGTA
3' ss Score
7.55
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
GTTCGGCGTTGGGCTATCTTGACTGCAAGAAACTTGGGGAAAGTGGACAGAGATGATTATTATGACTTACAAGAAGTTTTACTTTGCCTTTTTAAAGTCATTGAGTTGGGGCTTTTAGAGAGTCCAGACATTTATACTTCTTCTGTCCTAGAGAAGGGTAAACTGATTCTTCTGCCCTCACACATGTATGATACTACCAACTACAAAAGCTATTGGTTAG
Seq A exon
GTATTTGCATGTTGCTGACCATTCTTGAGGAACAAGCCATGGATTCCCTGTTGTTGGGCTCAGACAAACAAAATGATTTTATGCAATCGATACTTCACACTATGGAGAGGGAAGCAGATG
Seq C2 exon
ATGATAGTGTGGATCCTTTCTGGCCAGCGTTACACTGTTTTATGGTGATTCTGGATCGCCTTGGATCTAAGGTCTGGGGTCAACTTATGGATCCTATTGTGGCATTTCAAACCATTATCAACAACGCAAGCTACAATAGAGAGATCCGACATATACGGAACAGCTCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290-'23-21,'23-18,24-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGGGCTATCTTGACTGCA
R:
AAAACAGTGTAACGCTGGCCA
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains