BtaEX0032105 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024822 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr11:102409097-102452693:-
Coord C1 exon
chr11:102452517-102452693
Coord A exon
chr11:102423593-102423712
Coord C2 exon
chr11:102409097-102409196
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACTATATGTGGTCTTACAGGTA
3' ss Score
9.38
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
ATGAGTACATGTTGTTGGTGTACCCCAGGTGGTACTTCCACCACTGACTTCCTACAACGCTATGCATCCAGGACCCACTCCAGTGAATTTCAGACAGCTGATGAAGACCTCTGCTACTGCTTGGAGTGTGTGGCTGAATACCACAAAGCAAGGGACGAATTGCCGTTCTTACATGAG
Seq A exon
GTATCTGTATGCTGCTGACCATTCTTGAAGAGCAAGCCATGGATTCACTGTTGTTGGGCTCAGATAAACAGAATGATTTTATGCAGTCAATACTTCACACCATGGAGAGGCAATCAAATG
Seq C2 exon
GTGGCACAGGAATGGATCAGCTCTCCAAACAAAGAGAAATTCCATCAGTTACATTTACGAAAATTTCCTGGTGATTATAAAAAATACTGGGAGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024822_MULTIEX1-4/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTTGGTGTACCCCAGGT
R:
TCACCAGGAAATTTTCGTAAATGT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development