DreEX6082832 @ danRer10
Exon Skipping
Gene
ENSDARG00000022996 | setx
Description
senataxin [Source:ZFIN;Acc:ZDB-GENE-070402-1]
Coordinates
chr21:3784537-3787391:+
Coord C1 exon
chr21:3784537-3784756
Coord A exon
chr21:3787021-3787131
Coord C2 exon
chr21:3787217-3787391
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTTGTGTCCTTTAGGCA
3' ss Score
10.28
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
GTGCGTCGCTGGGCAATTGATCTAGCAAAAACCTTAAAGAGTGTGGACCGGGATGCCTATTATGACCTTCGGGAGATCTTCGCTTGCATGTTTCAAATAATCGAGCTTGGAATATCTTTAGATTTACCAGATTTGGATCCTGGGTGTTATGCAAGCGGAAAAGTGCCCATGCTGCCCTCTCACCTCTATGATGCAAAGAACAAGAAGAACTACTGGCTAG
Seq A exon
GCATCTGTATGTTACTAACACAGCTCAGCGCTGAGGCAATGGACTCTCTCTTCGTGGGACAGTTTAATATCCCGCTTTGCATACTCAATACAATGGATGCATTGAAAAGGG
Seq C2 exon
AGGATAACCCGGCTTCTGACCCTTTCTGGCCAGCCCTCCACTGTTTCATGGTCATTTTAGACCGTCTTGGTTCTAAGATTTGGGCTCAGGTTGACCCTAATATGGCTTTCCAGACCATCACCGGAGCAGCCAGCTATGTGTGTGAATTAAGAAGCATCCAGCAAAAGACAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022996-'7-6,'7-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127262=SEN1_N=PD(13.1=28.4)
A:
PF127262=SEN1_N=FE(8.2=100)
C2:
PF127262=SEN1_N=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTAAAGAGTGTGGACCGGG
R:
GACCATGAAACAGTGGAGGGC
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]