HsaEX6099524 @ hg19
Exon Skipping
Gene
ENSG00000092421 | SEMA6A
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:HGNC Symbol;Acc:10738]
Coordinates
chr5:115833023-115840678:-
Coord C1 exon
chr5:115840541-115840678
Coord A exon
chr5:115837906-115838023
Coord C2 exon
chr5:115833023-115833083
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCCATCTCCTCTTTTCACAGATA
3' ss Score
10.77
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GGTGAAGTAGAGAAATAAAGTCTCCCCGCTGAACTACTATGAGGTCAGAAGCCTTGCTGCTATATTTCACACTGCTACACTTTGCTGGGGCTGGTTTCCCAGAAGATTCTGAGCCAATCAGTATTTCGCATGGCAACT
Seq A exon
ATACAAAACAGTATCCGGTGTTTGTGGGCCACAAGCCAGGACGGAACACCACACAGAGGCACAGGCTGGACATCCAGATGATTATGATCATGAACGGAACCCTCTACATTGCTGCTAG
Seq C2 exon
GGACCATATTTATACTGTTGATATAGACACATCACACACGGAAGAAATTTATTGTAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092421-'5-7,'5-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(28.8=42.5)
C2:
PF0140314=Sema=FE(33.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTAGAGAAATAAAGTCTCCCCGC
R:
TGCTACAATAAATTTCTTCCGTGTGT
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)