BtaEX6039776 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020489 | SEMA6A
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:HGNC Symbol;Acc:HGNC:10738]
Coordinates
chr7:38732390-38739793:+
Coord C1 exon
chr7:38732390-38732489
Coord A exon
chr7:38734993-38735110
Coord C2 exon
chr7:38739733-38739793
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCCATGTCCTCTTTTCACAGATA
3' ss Score
10.59
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGAGGTCAGAAGCCTTGCTGCTATATTTCACACTGCTACACTGTGCTGGGGCTGCTTTCCCAGAAGATTCTGAGCCAATCAGTATTTCGCATGGCAACT
Seq A exon
ATACAAAACAGTATCCGGTGTTTGTGGGCCACAAGCCAGGACGGAACACCACGCAGAGGCACAGGCTGGACATCCAAATGATCGTGATCATGAACAGAACCCTCTACATTGCTGCCAG
Seq C2 exon
GGACCATATTTATACTGTTGATATAGACACCTCACACACAGAAGAAATTTATTGTAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020489-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.9=42.5)
C2:
PF0140314=Sema=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGTCAGAAGCCTTGCTG
R:
CAATAAATTTCTTCTGTGTGTGAGGT
Band lengths:
154-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]