RnoEX6058729 @ rn6
Exon Skipping
Gene
ENSRNOG00000004033 | Sema6a
Description
semaphorin 6A [Source:RGD Symbol;Acc:1305493]
Coordinates
chr18:41383299-41389510:-
Coord C1 exon
chr18:41389411-41389510
Coord A exon
chr18:41387219-41387336
Coord C2 exon
chr18:41383299-41383359
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCCATCTCCTCTTTTCACAGATA
3' ss Score
10.77
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
ATGAGGCCAGCAGCCTTACTGCTGTGTCTCACACTGCTACGCTGCGCTGGGGCTGGTTTCCCAGAAGATTCTGAGCCGATCAGTATTTCGCATGGCAACT
Seq A exon
ATACAAAACAGTATCCGGTGTTTGTGGGCCACAAGCCAGGACGGAACACCACGCAGAGGCACAGGCTGGACATCCAGATGATCATGATCATGAACAGAACCCTCTACATTGCTGCTCG
Seq C2 exon
AGACCATATTTACACTGTTGATATAGACACATCCCACACAGAAGAAATTTACTGTAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004033-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.9=42.5)
C2:
PF0140314=Sema=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTACTGCTGTGTCTCACA
R:
GCTACAGTAAATTTCTTCTGTGTGGG
Band lengths:
146-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]