GgaEX1051696 @ galGal3
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
NA
Coordinates
chrZ:70718413-70726835:+
Coord C1 exon
chrZ:70718413-70718512
Coord A exon
chrZ:70721158-70721275
Coord C2 exon
chrZ:70726775-70726835
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCACTTCCCACAGATA
3' ss Score
11.41
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
ATGAGGTCAGAAGCCTTGCTGCTATATTTCACACTGCTACACTTTGCTGGGGCTGGTTTCCCAGAAGATTCTGAGCCGATCAGTATTTCGCATGGCAACT
Seq A exon
ATACAAGACAGTATCCGGTGTTTGTGGGTCACAAGCCGGGACGGAACACCACGCAGAGGCACCGGCTGGACATCCAGCTGGTCACGGTCATGAACAGAACCCTCTACATTGCTGCTAG
Seq C2 exon
GGACCATATTTATACTGTTGATATGGACACATCACATACAGAAGAAATTTATTTTAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.9=42.5)
C2:
PF0140314=Sema=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGTCAGAAGCCTTGCTG
R:
TTCTTCTGTATGTGATGTGTCCA
Band lengths:
146-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]