GgaEX1051696 @ galGal4
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
Semaphorin-6A isoform4 [Source:UniProtKB/TrEMBL;Acc:E1C1C2]
Coordinates
chrZ:72436110-72444570:+
Coord C1 exon
chrZ:72436110-72436247
Coord A exon
chrZ:72438893-72439010
Coord C2 exon
chrZ:72444510-72444570
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCACTTCCCACAGATA
3' ss Score
11.41
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
TGTGAAGTGAAGAAGTAAAGTCTCCCAGCTGAACTACTATGAGGTCAGAAGCCTTGCTGCTATATTTCACACTGCTACACTTTGCTGGGGCTGGTTTCCCAGAAGATTCTGAGCCGATCAGTATTTCGCATGGCAACT
Seq A exon
ATACAAGACAGTATCCGGTGTTTGTGGGTCACAAGCCGGGACGGAACACCACGCAGAGGCACCGGCTGGACATCCAGCTGGTCACGGTCATGAACAGAACCCTCTACATTGCTGCTAG
Seq C2 exon
GGACCATATTTATACTGTTGATATGGACACATCACATACAGAAGAAATTTATTTTAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294-'11-6,'11-4,12-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.9=42.5)
C2:
PF0140314=Sema=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGTGAAGAAGTAAAGTCTCCC
R:
ATTTCTTCTGTATGTGATGTGTCCA
Band lengths:
186-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]