MmuEX6001487 @ mm10
Exon Skipping
Gene
ENSMUSG00000019647 | Sema6a
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:MGI Symbol;Acc:MGI:1203727]
Coordinates
chr18:47300084-47306493:-
Coord C1 exon
chr18:47306356-47306493
Coord A exon
chr18:47304104-47304221
Coord C2 exon
chr18:47300084-47300144
Length
118 bp
Sequences
Splice sites
3' ss Seq
CGTCTCCTCCTTTTTCACAGATA
3' ss Score
10.28
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GGTGAAGTAGAGAAGCAAGTCCCCCCGCTGAACCTACTATGCGGCCAGCAGCCTTACTGCTGTGTCTCACACTGCTACACTGCGCTGGGGCTGGTTTCCCAGAAGATTCCGAGCCAATCAGTATTTCGCATGGCAACT
Seq A exon
ATACAAAACAGTATCCGGTGTTTGTGGGCCACAAGCCAGGACGGAACACCACGCAGAGGCACAGGCTGGACATCCAGATGATCATGATCATGAACAGAACCCTCTACGTTGCTGCTCG
Seq C2 exon
AGACCATATTTATACTGTTGATATAGACACATCCCACACAGAAGAAATTTACTGTAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019647-'9-7,'9-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(10.6=42.5)
C2:
PF0140314=Sema=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTAGAGAAGCAAGTCCCC
R:
GCTACAGTAAATTTCTTCTGTGTGGG
Band lengths:
195-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types