HsaINT0145961 @ hg19
Intron Retention
Gene
ENSG00000196876 | SCN8A
Description
sodium channel, voltage gated, type VIII, alpha subunit [Source:HGNC Symbol;Acc:10596]
Coordinates
chr12:52188155-52202299:+
Coord C1 exon
chr12:52188155-52188425
Coord A exon
chr12:52188426-52200065
Coord C2 exon
chr12:52200066-52202299
Length
11640 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCTTCTATTCCTCTTCTTAGGAA
3' ss Score
9.97
Exon sequences
Seq C1 exon
AACAAAATCCAAGGAATCGTCTTTGATTTTGTCACTCAGCAAGCCTTTGACATTGTTATCATGATGCTCATCTGCCTTAACATGGTGACAATGATGGTGGAGACAGACACTCAAAGCAAGCAGATGGAGAACATCCTCTACTGGATTAACCTGGTGTTTGTTATCTTCTTCACCTGTGAGTGTGTGCTCAAAATGTTTGCGTTGAGGCACTACTACTTCACCATTGGCTGGAACATCTTCGACTTCGTGGTAGTCATCCTCTCCATTGTGG
Seq A exon
GTGAGTGGGGTTGGGGAAGTAGGCGAGGGGAAAGGGGACCTGACTGATTGTGAGGATGAGATTTCCCAGGAGAGGAATGAATGACACAGGTCTGAAGTGCAGGCAAGATACCCTCATAGCTTAAGTCCATGTGTGCCCCTGAGTCATCTCGGGGGCCTGCCTAGCAGGTTCCATGGTCAGTGAGTTTCTACTGAGTGTTCTCGGTAGTCTTGGATTATAAATTCTGTGGCTCAGGGAAAAAAGAAAAAAAAAGAAGATTGGTTCTTGCTTTTAAGGAGTTTAAAGTCTAACAGGGAAGGTAAAAGAAAGTTGTCATTAAAAAATGTAGCACAATAGAAGTATAAAATGAAAGAAGGAATGATTGCTAAGTTGGCCATTAATGAAATAGTCTAGGTAAGTTCTGGTGGTGATGGCCATGGTAGTGCTGCTGTTACTGGCAGGGCTTGTTTACTGAGATTTTACTGTGGGCCAACTACAGTTTGAGAGTTTCTTCACCTGTGTTATCTCATTTGATTCTTATTACATCCCAGGAAGCAAGCTTCTTTATTATCTGGACTGTATACATGTCCACAGCCACTCGCTAGGAGGTGGTGGAGGCATAACTCGAGTTGATCCCAAAGTCCAAGTTTTTTAACAGTGACTGTGTGCATTTTGCTTCAACCTAAAAGTGTGGGGGGATGATGTCCTGGCAGGCAGGCAGAAGGAAATGCCACCCTGTTGATTGCCCTCCCAAAATGTTTCCTTGCCTTCCTGAAAGGCATCTTTTGTGATAAAACTCAGCCTTGTTTCCAGGTAAGTTTGACTCATTTACACTAGAGAGAGTGCTCGAGACCCATGGGACCAGCCCCAGAGCTCCAGCGGCCATGCTGGGCCTAGTGTAGTGGTTATAAGGTACCAGAAGGCAGGGGTCTCCCCTTGGCCTGTGCCACCCTCTAGTTCTGTCCTCCAGAGCAGCATGTCCAAAAGTGTGTTGATATGTGGAACACTAATCCTAGACATTTCTCCTCAAGAAAAGAATCTCATGAGGGAATTACTTTAGGTAACACTGCCTTTAATTTTCCTTTGAGGATTCACAGTGCACATTACTGAATTCTCTTGGAAATCCTACGGTAAAGAATTCTGGGCCGGGTGCAGTGGCGCGTGCCTGTAATCCCAGCACTTTGGGAGGCAAGGCGGGCAGACAACTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACATGATAAAACTCTATCTCTGAAAAAAAAAAAAAAAAATGAGCCAGGCATGGTGATACGTGCCTGTAGTCCCAGTTACTTGGGAGGCTGAGGTGGGAGGATTGTTTAAGCCCGGGAGGTCAAGGCTGCAGTGAGCTGAGATCACGCCATTACACTTCCTAGATGACAGAGAGAGACCTAGTCTCAAAAATAAAGAATTCTGTTTAAATGTAACATAGCATCCCACCTTTATTAGACCAGTTTCCTTTTTTTCAGTAATAATAATGATAGCTCACATTTAAATGGAACACATTATGTGCCAGGTACCATAATAAGTGCTTTAAATATGTTAATTCATATAATCCTCTCAACAAACCTCTAAGAATCCTGAGGAACTGAGGCACAGAGAGGTTCCCAAGACATGTGGCTGGTAAGTGAGCAAGTGGGGATTCAAGCCCAGCCCCTGGCCTCAAGTCCATTCTCCTAATTTCTCACAAAACACACTTTGGACAATGCTACCCTTGTCCACTGCTCTTGAAACTTTCCTGGCCACTTATCGTTGAGTGACACAGAAAATCCACAGACCAAATCATACCCCCTATTTTCAAATGGTACTCTAAAAAGAGGAAGATGTTTTTGATGATGGGGATTTTTATTAACATTAATTTGTTCAGAAACAAAAGTATAGAAATCATCTTTTTAAAGTAAGAAATGTATTAGAGTTTTGTAGAGGGACAAAACTAATAGGATAGATGTATATATGAAAGGGAGTGTATTAAGGAGAACTGACTCACGATCACAAGGTGAAGTCCCACGATAGGCCATCTGCAAGCTGAAGGGAGCCAGTAGTGGCTCAGTCTGAGTCTCAAATCCTCAAAAGTAGGGAAGCTGACAGTGCAGCCTTTGGTCTGGCCAAAGGCCAGAGAGCCCCTGGCAAACCACTGGTGAAAGTCCAAGAGTCTAAAAGCTGAAGAACTCAGAGTCTTATGTTCGAGGGCAGGAAGCATCCAGCGCGGGAGGAGATGAAGGCCAGAAGACTCAGCAAGTCAGCTTCTTCCATCTTCTTCTGCCTGCTTTTTCTAGCTGAGCTGGCAGCCGATTAGATGGTGCCCACCCACATTGAGGGTGGGCCTTCCTCTCCCAGTCCACTGACTCAAATTAAAAGTAATGGCAAAAACTGCAATTACTTTTGCACCAGCCTAATCTCTGGTAACACCCAGAAACGATACTTTGCATCCTTCAGTCCAATCAAATTGACACTTAATATTAACCATTACAAGTCCACCCCTTGCCAACTTGAACCCATACACATCTCCTGAAATCATACTTAATCTCCAAATAAATACAATAATAAGGTCCTAATTACGCCTAACATAATACAGCTATCCTTCATACAACCAGAAGCGCACTAATCCTTAACCTGAATGCTATTACATAAAGTTAACAACACTTAAATGCTGATACGAAGTCAACAAATCTTACGTCACATGATAAAGGAAAAAGAAAAGAACTAAAATGAAGATATTTTCCTAGTACAAGTGTATACATGCACAAACATGTTCTTAACAAAATGAGGAAATACTCATGACAATAGTCTTCATTTCTGCAACTGGTCACGTGGTCGTAGCTGGTATTGATGACTACCTTCTACTACTCATTCTATATTCACTTTGCCTTCAGCAAGCACCACGGCTGGTTGTGGTTATTTACCTGGTGGAGTGACCCAAATCTTCATTCCTAAAGGGTTTGGGGCATTTGTAGTCCTACCTGGATTGGGCTGTTGTAGTTTCCCATTGACCTTAATCACAGGGCATGCTAATACTAAGAGACGCCCTAAGGGATCTCCTGTATTCCATGCATACTCTTCCATACCTCCATTGTGGAGCAGTAGACTGATTTCATCTTGATAGTCTGGGTCAGTCACCCCAGCCAACACTATAACTCCCTTCTTAGACTGTTGACTTAGAGGTAGCCCAAAGTGGCTAGGTGGCCATCTTAACTTCAGGTTTAATGGAATCATTGTTGTGTCTCCTAGTGACAGCATTCCTCCCTCTGGAACTAAGACCTTTAGGCCAGCAGAACATAATGTCGCAGGAACAGGAGGCAAAAATTTTGCTAGCCGGTCACTAGGGGTGATGGGGAGTGGTGCCACTTCCATTTCCACCCCTTGATTCCTGGACCCATGAATCCTGGCTATGGGAGAAACAGTACCATATATTGGACACTGATTCAAAGCATACATGGCCTTCTGGAGAACTTTGCCCCAGCCCTGCAAAGTATTGTTACCTAGTTGGCATTGTAATCATGACTTCAAAAGGCCATTCCACCATGCTATCAATCCAGCTGCTTCAAGATGATGAGGAACATGGTAACACCAGTGAATTCCATGAGCATGAACCCACTGCCGCACTTCTTAGCTGTAAAGTGAGTGCCTTGGTCAGAAGCAATGCTGTGTGGAATACCATGATGGTGGGTAATGCATTCCGTGAGTCCACAGATGGTAGTCTTGGCAGAAGCATTGCATGCAGGATAAGCAAACCCATATCCAGAGTAAGTGTCTGTTCTGGTGAGGACAAACCGCTGCCCTTTCCATGATGGAAGAGGTCCGATATAAGCAGCCTACCACCAAGTAGCTGGCTGATCACCCCGAGGAATGGTGTCATATTGAGGGCTCAGTGTTGGTCTCTGCTACTGGCAAATTGGACACTCAGCAGTGGCCACAACCAGGTCAGCCTTGATGAGTGGGAGTCCATGTTGGTGAGCCCATGCGTAACCTCCATCCCTGCCACTATAGTCACTTTGTTCATGGGCCCATTGGGCAATGACAGGGGTGCCTGGGGAAAGAGGCTGAGTGGTGTCCACAGAATGAGTCATCCTATCCACCTGATTATTAAAAGCCTCCTCTGCTGAGGTCACCCTTTGGTAAGCATTCATGTGGGACACAAATATCTTCACAGTTTTTGACCACTCAGAGAGGTCCATCCACATACCTCTTCCCCAAATTTGTCACCAATCATGCTTCTTTGAAGTCCCTGACCATCCAGCCAAACCATTTGCTACAGCCCATGAATCAGTATATAATCACACATCTGGCCATTTCTCCTTCCATGCAAAGTGCACAGCCAGGTGCACTGCTCGAAGTTCTGCCCACTGGGAAGATTTCCCTTCAGTGCTCTCCTTCAGGGATGTCCTAGAAAGGGGCTATAGTGCTGCAGCTGTCCACTTTTGGGTGGTGCCTGCATTTCGTGCAGAACCGTCTGTAAACTAGGCCCTAGTCTTCTCTTCTTCTGTCAGTTGATCATAGCGAACTCCCCATGAGGCCATCTCTGCAGGCTCTGGGAGAGAAGGTAGGGTGGCAGCAGTGGGGACCATGGGCATTTGAGCTACTTCCTCTTGTAACTTACTTGTGCCTTTAGGACCTGCTCGAGCCCAATCAGGTGCATACCATTTCCATTTGACGATGGAATGCTGCTGTGCGCACCCAACTTCATGGCTAGATGGGTCAGAGAGCACCTAGTTCATGAGAGGCGGTTCAGGCCACATGGTAACTGGGTGACCCATGGTCAAACGTTCAGTTTCCACCAAAGCCCAGTAACAGGCCAAGAGCCGTCCCTCAAAAGGCGAGTAGTTATCTGCAGAAGATGGCAGGGCCTTGCTCCAAAATCCTACGGACCTCCTCTGTGATTCACCTATGGGGGCCTACCAAAGGCTCTAAACAGCATCCCTATCTGCCACTGATACCTCAAGCACCACTGGATCTGCTGGGTCATATAGCCCAAGTGGCAGAGCAGCTTGCACAACAGCCTGGACCTATTGCAGAGCCTTCTCCTGTTCTAAACCCCACTCAAAACTGGCAGCCTTTCAGGTGACTCAATAAATGGGCCGGAGTAACATACTCAAATGAGGAATGTGTTGCCCCCAAAATCCAAATAGGCCCACTAGGCGTTGTGACTCTTTCTTGGTTGTAGGAGAGGCCAAATGCAACAACTTATCCTTCACCTTAGAAGGAATATCTTGACAGGCCCCTCAGCACTGGGCCCCTAGAAATTTCACTGAGGTAGAAGGTCCCTGAATTTTAGTCTGATTTATTTCCCATCCCCTGGCACCCAAATGTCTCACCAGTAAGTCCAGTGTGTTTGCTACTTCTCGCTCACTGGGTCCAGTCGGCATAATGTCATCAATGTAATGGACCATCATGATATCTTGTGGAAGGGAAAAGCGATCAAGATCTCTGCGAGCAAGATTATGACACAAAGCCAGGGAGTTTATATACCCCTGAGGTAGGACAGTAAAGATATATTGCTGGCCTTGCCAGCTGAAGGCAAATTGCTTCTGGTGGACCTTATGGACAGGAATGGAGAAAAAGGCATTTGCCAAATCCGTAGCTGCATATCAGATACCAGGAGATGTGTTAATTTGCTCAAGCAATGAAACCGCATCTGGTACAGCAGCTGCAGTTGGAGTCGTCACCACTTGGTTCAGCTTATGATAATCCACTGTCGTTCTCCAAGATCTATCTGACTTCTGCACAGGCCAAATAGGAAAGTTGAATGGGGATGTGGTGGGAATCACCACCCCTGCATCTTTCAAGTCCTTGATGGTGGCACTAATCTCCACAGTCCCTCCAGGGATGCAGTATTGTTTTTGATTTACTGTTTTTCTAGGTAGAAGCAGCTCTAATGGCTTCCATTTGGCCTTTCCCACCATAATAGGCCTCACACTACCAGTCAGCCAATATGGGGATTCTGCCAGTTGCTAAGTATGTCTGTGTCAATTATACATTCTGGCACTGGGAAAATGACCACAGGATGAATCCGGGACCCACTGTAAGTCAGACCTGAGCTGAAACTTCATTAATTATCTGACCTCCATAAGCCCTTACTCTAACTGGAGGACCACAGTGATGTTTTGGGTCCCCTGGAATCATTGTCAGCTCAGAGCCAGTGTCCAGTGTCCAGTAGTCCCCGAAAGGGGACCAGTTACCCTGGTAAAAGACCGGAGGTCTCCTTGGGGAAGCATGGGAGAAAGATTAGCAGTATAAATTGTCAGTAGTGTAGTGGGGTCCTTCCTCAAAGGGACCAGGCCTCCCCTTTATTCAAGGGGAATATTATTCTGGGTCTGTACGCTGGTTCAAGTCTGGAAATTGGTTGAGGGGGCATGATTCTCTATTTTTATAATTCAAATTAGCCTTTTGTCCACTTGACCTGGAAGTTTTCTGCTTACACAAATCAAGAAAGAATGTAGTAGGCTTCCTATCAATTTCACTTCTAGGAACACCATGATTAATTAGCCAATGCCAGAGCTCTACACTAATCAGACTATTCTGAATGCTGCTTTGCCTCTGCTATCCATTATGGTAGCTACGCCCACCTTGCCTTTGACAGTTGAGTGCCCCCACTCAGCCCCTGCCACCTTGGGATCCAATTATTCCCATTGCATTTAAATTATCCAGTTAAGTGACTGCAGTTCCCACTGTAAGATCTGGCATACAGGGAAGAGCAATCACAGAGCTCTTCAAGGATGCAGGTGCTCCCCTCACAAATCTGTTTTGCAAGCTATTAAGGGTATGTCTTCTGGACCCTACCAGTTGGGATGAGTAGGTCTAAGGTGACTAATCCACTCTAGCATTCCAATCTCCCTAAGCCTTTGGATCCCTTCCTCTACATTAAACCAAGGGAGATCAGGCATTTCCAGCTTACTCACAGTGGGCCATCTTTTGATCCACGTTTCAGCTAACCAAGCAAATAAACTATTAGAACCTTTTTAACTCCCCGAGCTGCGATATTAAACACAGAATCCCTGCTTAGTGGGCCCATATCAATAAATTCAACCTGATCCAACTTTATGTTCCTTCCACCGTTGTCCTGCAACCTTAATATCCATTCCCATACCTGTTCTCCAGATTTCTGCTTATACAAATTAGAGAACTCCAGCAGGCCAGGCGCCATAGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGGGGGCGGATCACTTGACGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCATGCACCTGTAACCCCAGCTACTCCGGAGGCTGAGGCACGAGAATCACTTGAACCCAGGAGGTGGAGGTTGCAGTGAGTGGAGATTGCACCACTGCACTCTAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAGAAACTCAAGCAGTTCTTTTGGAGTGTAGCTCATCTCGTGAGTCACACTCTGAACCTCACTTCTAGAGAGCTGCCATGACTTGAGTCTAGTTACAGGTCTAGAAACAAACAGGGGTGTTGGGGGTGGGTTCAGAAGAGAATCAGCATTGTCTTGCTTCAGGGGAGACCACTGTTGCCTCAAGCATTGCAGGGTTAATCTCAGACAAATGTGGAAAGGCTGGTGGCAGCCTGGGTGGGGGAAGGGATATTGCCACCACTGGGGGTGAGGAGGCTGTTTTCTCTGGCAAAAAAGGCTGTCAGAGTTTACAAGCTCAGTGTCCCCAGCTTCATCAGGGTCCTCCCACACATCCCTATTCCAAGTCGCAGGGTCCCATTCTTTTCCAATCAGTGCCCTCACTTTAACAATAGATACCTAGGGAGGCTACGCATGCACCTTTCCTTGCAGGCCAGCCACTTGCGTGGTAAGAACTTGTGTCTGATTTTCCGCAAATTCAGCCCTTTGTCTACAGGAGATAAGACTCAGGGAAATCTTAGAAGACTTGAGGCTCAGTATGTGCTCTGGAGCTGGGAGTTAGAATCCCTGAGCTCATCCTTTTCTTTCATTACTTTCTCCAGTGAACTTAGGAGAACCAACCAACTTCATTATATTCCTTGGTTCTCCACATATGGTCAAATGTATTACGTACAGAGTCACTAAACTCCTTGCCTCTCAAGAACGACGAATCAGGAATATCAAATGCCATCTATTTTGCATAACTCTCTAAACAGTTCACACCAGGGACTATCAGTGTTCTCCATACTATCAGAAGTAGAGTCCTTAGCATTTTTGGGTCTAATCAGATTAAGCAGCCAACTCCAGAAACCCCAAAACCAACTAAAGAAATCTATTCTTAAAATTCTGTTCCTCTAGACCCACTCCTGGTACCAAAATCTGTCAGGGTTTTCTAGAGGGACAGAACTAATAGGATAGATGTGATCTCACATGATCACAAGGTGAAGTCCCACAGCAGGCCATCTGCAAGCTGAGGAGCAAGGAAGCCAGTAGTGGCTCAGTCTGAGTCCCAAATCCTCAAAAGTAGGGAAGCTGACAGTGCAGCCTTTGGTCTGTGGCCAAAGGCCCGAGAGCCCCTGTAAAACCACTGCTGTAAGTCCAAGGGTCCAAAAGCCAAAGAACTTGGAGTCTGATGTTCCAGGGCAGGAAGCATCCAGCGCGGGAGGAGATGAAGGCCGGAAGACTCAGCAAGTCAGCTTCTTCCACCTTCTTCTGCTTGCTTTTTCTAGCCGAGTTGGCAGCCGATTAGATGGTGCCCACCCACATTGAGGATGGGTCTTCCTCTGCCAGTCCACAGACTCAAATGTTAATCTCCTCTGGCAACACCCAGAAACAATGCTTTGCATCCTTCATTCCAATCAGGTTGACAATATTAACCATCACAAGGAATTGGGGTAAAACTAGCTCTGAAACCACCTACAGTACCCCTTAAATGGTGTTTCTACTGCCTACATTACTGTCTGCCCCATTTCTCCCTTTTTCTATGGGGACAAACACACATTCATCCTTCAAAACCTACCTCAGCCATCATCTTCTCTCTGAAGCCCTACTTGCCCACCATATATGGGCTGCAAGTATCACATATACTTGAATATATATTATATAACCTGACTTCTTTGGTCACTGGTTATGATTTAATTGAGAAGCTGAGAAATCATCATGGGTGGGTCCTGGCTAAGGTAGAGATTTTCTTGAAGGCTCAAATATCCCATGGAATTCTAGCTCCTGAAGAGGCTCCAAGAGGTTACTTGACCCGCTCGCTGAACTTACCGCATCTTGTCTTTTCCTGAAAAGCTAAGATTCTTCAAAGGGGATTCTATAGCCTTCTGCAGTTAACTGCCCCAGTGTTTATGCATTCTTATGAGTGAGAAATGTTTCCTTAAATTAAATCCCTCATGTCAGCTGAAGCTCCCATTGTCTTGTTAGTGCCTGGACGGCAAGAGAAGGTACTGAACGAAGAGAACATGTCAGTGCCTTCCCTTCGGTTGTCATTTCCCAGACTTTTCAACTCCCTTCCTTCTGTGGCCCCTCATTTGGGTCCCCTCATTGCTCTGTAGCTTTAAAGAACAAGTGGCCTGGTTGAGGTGAATCCCTGGACGAATATAACTAGAAAAAGGCGCTCCGATTTGTACACTTTCACCTTCTGCCTTTATATCCTAATGCCTTGGCATCTTTACCTGCTGATACTGGTTTCTTTTCTTTTTCTCTTTTCTTTTTTTTTTTTTTTTAAAGACAGAGTCTCTGCCTGTCGCCCAGGCTGGGGTGTGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGCTCACGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTCGGGTTACAGGCATGCGCCACCGCGCCCAGCTAATTTTTGTACCTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCATGCCTCAGCCTCCTGAATAGCTGGAATTACACTTGGCTAATTTTTTTGTATTTTTAGTAGAGACTGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTAGCCTCAAGTGATCTGCCCACTTCAGCCTCCCAAAGTGCTGGATTACAGGCATGAGCCATTGCGCCCAGCCTGATACTGGTTTCTGATTCACGACTTGCAGCACAAAATCTATCAGCTCAGAGTTGAAAGTCACTCCTGAGAGTCCCTTTAGTTTTCTAGGCTAGTTTGGTAGACTAGGGAGGTAGGGCTATGGGAAACCAAAGATGTTTTTTCAGAGCAAAGAAGAAGATACTTTGAAAATTGCTAGCATTAGAGAATAAGTAAGACATCAAAGTTAAAGGATAATGAGGTTATGAGGTGTAGCCAGGACCTCTCATTTATTGTTTGTGGATATGGAAATTTGATTCCATTGTGGAGAGTATCAGTATCATCTTGGAAAATCATATGTGCACAAATCTGGAAAAAAAACCTAATCATTCTTGAGTAGAAAAACAAGTAAATGAGGACCTATTCATAAAAGGGACTACCACTCAATTGTTAGAATGAGTAATCTAAAATTATTTCAACATGAGGGATCAGTCTCACAATTGTAATGTTAAATCTCAAAAACAAGGTAGAGACCTAAATAGATGGACCTCATAAGACAAATACAGCCTGGATGTGGCAGTTCACACCCGTAATCCCAGCACTTTGGGAGGTTGAGGAGGGAGGATCGGATTGCTTGAACCCAGGCATTCAAGACCAGCCCGGGCAACATAGCAAGACCCCCATCTCTACAAAATATTTAAAATAAATAAATAAGACAGAAACAGTATAATTTCCTAACCATAGTAGGAAATTATATATATATATATGATTCTTACATAGTAAATCTATAAAGGCACACACTAGAATGATACATACCATCTTCAGCATTGTGGATGCTTCATCTGGGAATGATGAAAGAGGAAGAAAAATTGGTAAAATGCTAGCCTCTATTAAATCTGTGTTCCATTCCAGTTACTCAGGAGGTCTGAGGCAGGAGGATCACTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACATAGCAAGACCCCATCTCAAAACAAAAAACAACAACATCAAAAGACAAATGTGTGTGTTAGTTATGTGTGTTAGGCACATAGGTGTCTATTTTATTGTTTACTTTTCTATATGTTTAAAATGTTACTTTTTTTTTTTGAGACAAGAATCTTGGTCTTTCACCAAGGCTGGAGTGCAGTGGCACGATCTCGGCTTACTACAACCTCCACCTACCAGGTTCAAGCGATTCTTGTGCCTCTGCCTCCCAAGTAACTGGAATTACAGATGTGCACCACCATGCCCAGCTAATTTTTTATTTTCAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCCAACTCCTGGCCTCAAGTAATCCACCTGCCTTGGCCTCCCAAAGTCCTGGGATTACAGGCGTGAGCCCCCATGCCCAGCCAAAATGTCACTTTTTGAGAGTTCAGACTGAATAGTAAGGCACTTATTCTGCAAAGCCCTTTGAACCTAAGGGTTCCACAATGCCAGGTAAAAAAAATAAAGAGAAAGGGTGTCTCCCATCTCAATAACATAACTTCTTCTATTCCTCTTCTTAG
Seq C2 exon
GAATGTTCCTGGCAGATATAATTGAGAAATACTTTGTTTCCCCAACCCTATTCCGAGTCATCCGATTGGCCCGTATTGGGCGCATCTTGCGTCTGATCAAAGGCGCCAAAGGGATTCGTACCCTGCTCTTTGCCTTAATGATGTCCTTGCCTGCCCTGTTCAACATCGGCCTTCTGCTCTTCCTGGTCATGTTCATCTTCTCCATTTTTGGGATGTCCAATTTTGCATATGTGAAGCACGAGGCTGGTATCGATGACATGTTCAACTTTGAGACATTTGGCAACAGCATGATCTGCCTGTTTCAAATCACAACCTCAGCTGGTTGGGATGGCCTGCTGCTGCCCATCCTAAACCGCCCCCCTGACTGCAGCCTAGATAAGGAACACCCAGGGAGTGGCTTTAAGGGAGATTGTGGGAACCCCTCAGTGGGCATCTTCTTCTTTGTAAGCTACATCATCATCTCTTTCCTAATTGTCGTGAACATGTACATTGCCATCATCCTGGAGAACTTCAGTGTAGCCACAGAGGAAAGTGCAGACCCTCTGAGTGAGGATGACTTTGAGACCTTCTATGAGATCTGGGAGAAGTTCGACCCCGATGCCACCCAGTTCATTGAGTACTGTAAGCTGGCAGACTTTGCAGATGCCTTGGAGCATCCTCTCCGAGTGCCCAAGCCCAATACCATTGAGCTCATCGCTATGGATCTGCCAATGGTGAGCGGGGATCGCATCCACTGCTTGGACATCCTTTTTGCCTTCACCAAGCGGGTCCTGGGAGATAGCGGGGAGTTGGACATCCTGCGGCAGCAGATGGAAGAGCGGTTCGTGGCATCCAATCCTTCCAAAGTGTCTTACGAGCCAATCACAACCACACTGCGTCGCAAGCAGGAGGAGGTATCTGCAGTGGTCCTGCAGCGTGCCTACCGGGGACATTTGGCAAGGCGGGGCTTCATCTGCAAAAAGACAACTTCTAATAAGCTGGAGAATGGAGGCACACACCGGGAGAAAAAAGAGAGCACCCCATCTACAGCCTCCCTCCCGTCCTATGACAGTGTAACTAAACCTGAAAAGGAGAAACAGCAGCGGGCAGAGGAAGGAAGAAGGGAAAGAGCCAAAAGACAAAAAGAGGTCAGAGAATCCAAGTGTTAGAGGAGAACAAAAATTCAGTATTATACAGATCTAAAACTCGCAAGTGAAAGATTGTTTACAAACTTCCTGAATATTATCAATGCAGAACAGCTGTGGAGACTCTAACCTGAAGATCTATACCAAACGTCGTCTGCTTACCACGTAACACAGCTGCATCTTGAGCAGTGACCTGCCAAGGGCAAAGGACCCCGCTCCCTAGACTTACAGATTTTCTAATGCTTGGGCAGGTGGTTACTGCATGTTCCACATCAGTCAATGCAACTTAGGACAAAACTAACCAGATACAGAAACAGAAGAGAGGCTGCCGGGACCAGCATATTTCCGTTGCAGCCAAATGGATTTTATTTTTTCATTTTATTGATTCTCAGAAGCAGAAAGCATCACTTTAAAAGTTCGTTTGTTCATGCAAACTATATTTGCATTCTTACATTAGTTAAGCTAAGCAGCAAAAAGAAAACACACACACACACTCACATTTAGCCCATGTCATTTAATTGTCAGTTTCTTTGACATAAAGCGCATCTTCTCCACATGGGCTTCACGTGGTTTGGAGATGGGTGGGGGAAAACAATCAGGTTTCTTCAGGCTGAGGAGGACTTGCTCAGGCCGATTCCAAACATTGTGCTCGTTCAATGCGTAGAAATGATTTGCATGATGGCATGCCGTGATCAGAAGTCATGCATGAGATCCATACACCACAGGACACTACTAATCTAGTCCCTTGCACTGGGTCAGCCTTTGGACAGGACCCAGCCCTGCACCGTTCACTGTATTTGGAGAAAATGGTAAGAGTTCCATACCGGCTACAATTCTTTGAGTTCTTAAAAGTCCTTCATACACCTTCTGGGTAGGGAAACAACCAACTAATTGACTAACACCACCAACAACAAAAAACAAACCCAATCCAACAAGCAGATGGATCCGTTGCGTGTATATGTTTAACAGACATCTCTAACATACAGCCATTGTTGCACATTTTGCAAGATGAACTATTTAATGCTGCTCTGTGTCCAGTACATGGGGGAGACTTTGATCCCAAATGGCTTGTACTATTTATGTCACTGTAAAACCAAATCCTAGGGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196876-SCN8A:NM_014191:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.175
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(20.5=47.3)
A:
NA
C2:
PF0052026=Ion_trans=PD(79.0=43.3),PF0061222=IQ=WD(100=5.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)