MmuEX0004882 @ mm10
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:22974844-23082291:+
Coord C1 exon
chr8:22974844-22975261
Coord A exon
chr8:23064952-23065053
Coord C2 exon
chr8:23082193-23082291
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTCCGCCCCCACAGGCC
3' ss Score
10.36
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGGCGGGCGCGGCGAGGGCGCGCGGCGAGCCCAGAGCCGGTGCGGGGCGCGGGCGAGCGAGCTCCGGCCGCGGCGGGAGGCGCCACCCCGGGGCTCGGCTAGCCGCGCGCCGGCCTCTCCTCGCCCTCCGCCCCGCGCCCCGGCCCCCGGGCGCCGCAGCCTTCGCCTCCGCCGGGGAGAAGCTCGCGCCCTGCGCAGCTGAAGGAGCCGGCTCTCCCCGGGAGGGTGTCGTCGCCGCCGGCTCGCAGAGGGCGCGGGCCCGGGAGGCGGGGACCGAGCGCCGCGACCCGCCATGGCTCAGGCGGCCAAACAGCTGAAGAAAATCAAAGACATCGAGGCGCAGGCCCTCCAGGAGCAGAAGGAGAAGGAGGAATCCAACAGGAAGCGGCGGAACCGCTCCCGTGACCGCAAGAAGAAG
Seq A exon
GCCGATGCTGCTACCAGCTTTCTGCGGGCGGCACGCTCGGGGAACCTGGACAAGGCTCTGGATCACCTGCGCAATGGAGTGGACATTAACACCTGTAACCAG
Seq C2 exon
AACGGGTTGAACGGCCTGCATCTGGCCTCCAAAGAAGGCCATGTGAAGATGGTGGTTGAACTTCTGCACAAAGAGATCATTCTAGAAACGACAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'0-10,'0-9,5-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=0.157 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(29.0=79.4)
C2:
PF136371=Ank_4=PD(40.7=66.7),PF127962=Ank_2=PU(10.8=24.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGGAGCCGGCTCTC
R:
TTCTTTGGAGGCCAGATGCAG
Band lengths:
257-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types