GgaEX6024760 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2682738-2711153:-
Coord C1 exon
chr22:2711028-2711153
Coord A exon
chr22:2686219-2686320
Coord C2 exon
chr22:2682738-2682836
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTTCATTTTTTTCCCCAAGGCT
3' ss Score
7.59
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATGGCTCAAGCAGCAAAGCAGCTGAAGAAAATCAAAGACATTGAGGCTCAGGCTCTACAGGAGCAGAAGGAGAAGGAAGAATCCAATCGCAAGCGCAGGAACCGCTCTCGGGACCGGAAGAAAAAG
Seq A exon
GCTGATGCTGCGACCAGCTTCCTGAGAGCTGCAAGATCTGGGAATCTGGACAGAGCCTTGGATCATCTCAGGAATGGGGTAGATATTAACACCTGTAACCAG
Seq C2 exon
AATGGGCTGAATGCCTTGCACCTGGCCTCCAAGGAGGGCCACACGAAAATGGTGGTGGAGCTTCTGCACAAGGAGATTGTTTTGGAGACCACTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'0-2,'0-1,5-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=0.265 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(29.0=79.4)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGCAGCAAAGCAGC
R:
CTTGGTAGTGGTCTCCAAAACA
Band lengths:
221-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]