RnoEX6055930 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73802933-73827488:-
Coord C1 exon
chr16:73827450-73827488
Coord A exon
chr16:73820728-73820829
Coord C2 exon
chr16:73802933-73803037
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTCCCCCCCGCACAGGCC
3' ss Score
8.36
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATGGCAGAACGGCCGCGCAGGTCGGGGTCAGACCCCGCG
Seq A exon
GCCGATGCTGCTACCAGCTTTTTGCGGGCGGCACGCTCAGGAAACCTGGACAAGGCTTTGGATCACCTACGCAATGGAGTGGACATTAACACCTGTAACCAG
Seq C2 exon
AACGGGTTGAATGGCTTGCATCTGGCCTCCAAAGAAGGCCATGTGAAGATGGTGGTTGAACTTCTGCACAAAGAGATCATTCTAGAAACAACAACCAAGGTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'1-6,'1-1,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.229 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(28.7=79.4)
C2:
PF127962=Ank_2=FE(36.2=100)
Main Skipping Isoform:
ENSRNOT00000064070fB1053
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTCGGGGTCAGACC
R:
CCTTACCTTGGTTGTTGTTTCTAGA
Band lengths:
128-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]