GgaEX6024760 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2632054-2660633:-
Coord C1 exon
chr22:2660493-2660633
Coord A exon
chr22:2635535-2635636
Coord C2 exon
chr22:2632054-2632152
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTTCATTTTTTTCCCCAAGGCT
3' ss Score
7.59
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATGGCTCAAGCAGCAAAGCAGCTGAAGAAAATCAAAGACATTGAGGCTCAGGCTCTACAGGAGCAGAAGGAGAAGGAAGAATCCAATCGCAAGCGCAGGAACCGCTCTCGGGACCGGAAGAAAAAGGTCAGTGATGCTGGG
Seq A exon
GCTGATGCTGCGACCAGCTTCCTGAGAGCTGCAAGATCTGGGAATCTGGACAGAGCCTTGGATCATCTCAGGAATGGGGTAGATATTAACACCTGTAACCAG
Seq C2 exon
AATGGGCTGAATGCCTTGCACCTGGCCTCCAAGGAGGGCCACACGAAAATGGTGGTGGAGCTTCTGCACAAGGAGATTGTTTTGGAGACCACTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'1-2,'1-0,11-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.835 A=0.066 C2=0.182
Domain overlap (PFAM):
C1:
PF0102514=GrpE=PU(55.4=97.9)
A:
PF127962=Ank_2=PU(29.0=79.4)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGCAGCAAAGCAGC
R:
CTTGGTAGTGGTCTCCAAAACA
Band lengths:
236-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]