HsaEX0004110 @ hg38
Exon Skipping
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1 [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr8:41733971-41797622:-
Coord C1 exon
chr8:41797512-41797622
Coord A exon
chr8:41758036-41758137
Coord C2 exon
chr8:41733971-41734069
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTGTTGTTTTTCCTCACAGGCC
3' ss Score
11.79
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGAGGCTGCGGTGAGTCCGCCAGCCCCAGCTGCTCCTCCTCAAGCCCCCAAGGCCCTTCGGCGGGCCCCTGCTGAAAGACCGGCATGCCCTATTCTGTGGGCTTCCGCGAA
Seq A exon
GCCGATGCTGCTACCAGCTTTCTGAGAGCAGCAAGATCAGGTAACTTGGACAAAGCTTTGGATCACCTGCGGAATGGGGTAGATATTAACACCTGTAACCAG
Seq C2 exon
AATGGGTTGAATGGCTTGCATCTGGCTTCTAAGGAAGGCCATGTGAAAATGGTGGTTGAACTTCTGCACAAAGAAATCATTCTAGAAACGACAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-'1-12,'1-8,9-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.221 C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(28.4=79.4)
C2:
PF127962=Ank_2=PD(29.8=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCTGCGGTGAGTCC
R:
CTTGGTTGTCGTTTCTAGAATGAT
Band lengths:
210-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development