HsaEX0004110 @ hg19
Exon Skipping
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41591489-41754280:-
Coord C1 exon
chr8:41753873-41754280
Coord A exon
chr8:41615554-41615655
Coord C2 exon
chr8:41591489-41591587
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTGTTGTTTTTCCTCACAGGCC
3' ss Score
11.79
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGGAGGCGGCGGGCCCTGCCCAGAGCCCGTCCCGGGCGCCGGCAAGCGAGCTCCGGCCGCGGCGGCAGCGCCATCCCGGGCCGCGGGCAGCCGCCCCTCGCCCTCCGCGTCCGGAACTGCCTTCGCCTTCCCGCGACCCCGCAGCAGCCGGCCCTCGGGGCGCCACGAACGCTGTCCCCTCTGTGGAGCAGAGACCCCCTTCCCCTTCTTAGGGGGTGTCGCCTCGGGGATCGCTGAGCGCTAGGGGTCCAGGAGGCGGGGACGGGAGCGCCGTGACCCGCCATGGCTCAAGCGGCCAAACAGCTGAAGAAAATCAAAGACATCGAGGCGCAGGCCCTCCAGGAGCAGAAGGAGAAGGAGGAATCCAACAGGAAGCGGAGAAACCGCTCCCGTGACCGAAAGAAGAAG
Seq A exon
GCCGATGCTGCTACCAGCTTTCTGAGAGCAGCAAGATCAGGTAACTTGGACAAAGCTTTGGATCACCTGCGGAATGGGGTAGATATTAACACCTGTAACCAG
Seq C2 exon
AATGGGTTGAATGGCTTGCATCTGGCTTCTAAGGAAGGCCATGTGAAAATGGTGGTTGAACTTCTGCACAAAGAAATCATTCTAGAAACGACAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-'0-4,'0-3,3-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=0.048 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(29.0=79.4)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCCTTCCCCTTCTTAGG
R:
AGCCAGATGCAAGCCATTCAA
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)