MmuEX0041123 @ mm10
Exon Skipping
Gene
ENSMUSG00000035236 | Scai
Description
suppressor of cancer cell invasion [Source:MGI Symbol;Acc:MGI:2443716]
Coordinates
chr2:39080077-39083610:-
Coord C1 exon
chr2:39083538-39083610
Coord A exon
chr2:39080374-39080547
Coord C2 exon
chr2:39080077-39080177
Length
174 bp
Sequences
Splice sites
3' ss Seq
TAACATGTTTGTTATTACAGATC
3' ss Score
7.37
5' ss Seq
TAGGTACCC
5' ss Score
5.35
Exon sequences
Seq C1 exon
AATTTTACAAATTTGTTTGGACAGCCACTCGTCTGCCTTCTTTCTCCCACGGCATATCCAAAAGCTTTGCAAG
Seq A exon
ATCAGTCTCAGCGAGGTAGCCTCTTCACGCTCTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTGTCTGGATTGTCAAGCATGCGTAGAGGCCTGTGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGATATTGCCCAGCTACTGACCCATTCACGTTCAATAG
Seq C2 exon
ATCAGGCCTTCCTCCAGTTTTTTGGAGATGAATTTCTTCGATTGCTTCTCACAAGGTTTGTCTTCTGTTCAGCCACCATGAGGATGCACAAGGCCTTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035236_MULTIEX2-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(32.0=100)
A:
PF120703=DUF3550=PD(4.0=68.0)
C2:
PF120703=DUF3550=FE(6.7=100)
Main Skipping Isoform:
ENSMUST00000204093fB3583
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTACAAATTTGTTTGGACAGCCAC
R:
GAAAGGCCTTGTGCATCCTCA
Band lengths:
170-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types