HsaEX0011611 @ hg19
Exon Skipping
Gene
ENSG00000173611 | C9orf126
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:26709]
Coordinates
chr9:127733649-127738465:-
Coord C1 exon
chr9:127738393-127738465
Coord A exon
chr9:127733950-127734123
Coord C2 exon
chr9:127733649-127733749
Length
174 bp
Sequences
Splice sites
3' ss Seq
TAACATGTTTGTTATTACAGATC
3' ss Score
7.37
5' ss Seq
TAGGTACCC
5' ss Score
5.35
Exon sequences
Seq C1 exon
AATTTCACAAACTTGTTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCATATCCAAAAGCTTTACAAG
Seq A exon
ATCAATCTCAGCGAGGTAGCCTCTTCACTCTCTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTCTCTGGATTGTCAAGCATGCGCAGAGGCCTATGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGATATTGCCCAGCTACTGACTCATTCACGTTCAATAG
Seq C2 exon
ATCAGGCATTTCTCCAGTTTTTTGGAGATGAATTTCTTCGCTTGCTCCTCACAAGATTTATCTTTTGTTCAGCCACCATGAGGATGCACAAGATTTTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611-'20-26,'20-24,23-26
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=PU(75.0=96.0)
A:
PF120703=DUF3550=FE(11.7=100)
C2:
PF120703=DUF3550=FE(6.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAAACTTGTTTGGACAGCC
R:
CCGAAAAATCTTGTGCATCCTCA
Band lengths:
170-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)