RnoEX0078279 @ rn6
Exon Skipping
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23367152-23370682:-
Coord C1 exon
chr3:23370610-23370682
Coord A exon
chr3:23367450-23367623
Coord C2 exon
chr3:23367152-23367252
Length
174 bp
Sequences
Splice sites
3' ss Seq
TAACATGTTTGTTATTACAGATC
3' ss Score
7.37
5' ss Seq
TAGGTACCC
5' ss Score
5.35
Exon sequences
Seq C1 exon
AATTTTACAAATTTGTTTGGACAGCCACTCGTCTGCCTTCTTTCTCCCACGGCATATCCAAAAGCTTTGCAAG
Seq A exon
ATCAGTCTCAGCGAGGTAGCCTCTTCACGCTCTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTGTCTGGATTGTCAAGCATGCGTAGAGGCCTGTGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGATATTGCCCAGCTACTGACCCATTCACGTTCAATAG
Seq C2 exon
ATCAGGCCTTCCTCCAGTTTTTTGGAGATGAATTTCTTCGATTGCTTCTCACAAGGTTTGTCTTCTGTTCAGCCACCATGAGGATGCATAAGGCCTTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278-'29-28,'29-26,32-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(4.8=100)
A:
PF120703=DUF3550=FE(11.7=100)
C2:
PF120703=DUF3550=FE(6.7=100)
Main Skipping Isoform:
ENSRNOT00000039410fB12929
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACAAATTTGTTTGGACAGCCACT
R:
CGAAAGGCCTTATGCATCCTCA
Band lengths:
170-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]