DmeEX6014998 @ dm6
Exon Skipping
Gene
FBgn0035677 | CG13293
Description
This gene is referred to in FlyBase by the symbol DmelCG13293 (FBgn0035677). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (3 unique). Gene sequence location is 3L:6082883..6092188. Its molecular function is described by: transcription corepressor activity. It is involved in the biological process described with: transcription, DNA-templated. 8 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 06-24 hour embryonic stages, during early larval stages, at stages throughout the pupal period.
Coordinates
chr3L:6089210-6092188:+
Coord C1 exon
chr3L:6089210-6089464
Coord A exon
chr3L:6089526-6089729
Coord C2 exon
chr3L:6089790-6092188
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTGCCTTATTTCAGCTG
3' ss Score
10.09
5' ss Seq
TAGGTGGGC
5' ss Score
5.26
Exon sequences
Seq C1 exon
TTGGCTACGAGCTGGGAGGCCTGGCCACCAGCGTGAAGCGGGACAGCGTGGATGGTGGAGGGCTGTCCTGCCGAGGAAAATCGTACAAGGAGAACCACTGCCTATATCCGGGTGATCTATATCCGTTCACACGCCGGCCAATGTTCGTTGTGATCGACTCGGACAACTCGTTTGTCTTTCAGCACATACCGCGCTATTTTGGCCAGCCGCTGGTAGTGCTCATGTCCCCGCAGGATGTGCCGCCTGCATTCCAGG
Seq A exon
CTGATGTCCAGCATCATGGCTCGCTGTTTACGTTGTTCCTGCACTCCCCGCTCACCGCCCTCTGCTACATCTGCAACGTTGGAGACGTGCCCATCCACCACTGGGAACGCTGCCAGACCTACGTGGACCGCTTCATCACGGAGGCCTCGCGCCTTGTCACCCGGTGTCGCATCGATGAGATCGAGCAGGGCATTGGTTTTATAG
Seq C2 exon
ATTCCTCCTACGTGCAGTTCTTCGGCGACGACTTCCTGCGCACCCTGATCCTCCGTTTCGTCTTCTGTGATGTGGTGCTTCGGTTGCACCGTGGATTCCGGGGGCGGCACATGAGACCCCGCTGTGAGCCGCAGCTGCCGGCGAACGAACTGCTGGAGCACCCCTCGCTGTCGCACATCATCTTTCAGCTGGCCTCGGCCCTGGATGTGCGGGGTCACTTCTCGGAGGGACCGGAGTGCGACTGATGACTTTTTGCGGCCATAGTCGTGGTGGTGGCCATCGGGATCTGCCTGCGACAGCAGCTGTTCCACGTGATCGAGAGGCAGTTATCCGGATGGATGCTTTCGCTGTACAATACTTTTCCGCTGGGCTGGAACTGGGCATGAGATTGGTGGCGTTGCTGGCCATGGGTTTCCGTTTCCTTTCGTTGGCAGTGCTCCGGCTGCCGGCGTAAATCATTTCAATAACGTAACGCAACGTAACTGCAGTATAATACGAAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0035677-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(15.9=100)
A:
PF120703=DUF3550=FE(12.7=100)
C2:
PF120703=DUF3550=PD(6.2=40.2)
Main Inclusion Isoform:
FBpp0304371
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0304372, FBpp0304373, FBpp0304374
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCGACTCGGACAACTCG
R:
CGAGGCCAGCTGAAAGATGAT
Band lengths:
303-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)