BtaEX6046146 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95938074-95941602:-
Coord C1 exon
chr11:95941530-95941602
Coord A exon
chr11:95938364-95938537
Coord C2 exon
chr11:95938074-95938174
Length
174 bp
Sequences
Splice sites
3' ss Seq
TAACATGTTTGTTATTACAGATC
3' ss Score
7.37
5' ss Seq
TAGGTACCC
5' ss Score
5.35
Exon sequences
Seq C1 exon
AATTTCACAAACTTATTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCCTACCCAAAAGCTTTACAAG
Seq A exon
ATCAATCTCAACGAGGTAGCCTGTTCACTCTGTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTCTCTGGACTGTCAAGCATGCGTAGAGGCCTATGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGACATTGCCCAGCTACTGACCCATTCACGTTCAATAG
Seq C2 exon
ATCAGGCATTTCTCCAGTTTTTTGGAGATGAATTTCTTCGCTTGCTTCTCACGAGATTTATCTTTTGTTCAGCCACCATGAGGATGCACAAGATTTTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553-'22-20,'22-18,24-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(4.8=100)
A:
PF120703=DUF3550=FE(11.7=100)
C2:
PF120703=DUF3550=FE(6.7=100)
Main Skipping Isoform:
ENSBTAT00000020665fB6145
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTTGGACAGCCACTAGTCTGC
R:
CCGAAAAATCTTGTGCATCCTCA
Band lengths:
162-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]