MmuEX0041123 @ mm9
Exon Skipping
Gene
ENSMUSG00000035236 | Scai
Description
suppressor of cancer cell invasion [Source:MGI Symbol;Acc:MGI:2443716]
Coordinates
chr2:38935597-38939130:-
Coord C1 exon
chr2:38939058-38939130
Coord A exon
chr2:38935894-38936067
Coord C2 exon
chr2:38935597-38935697
Length
174 bp
Sequences
Splice sites
3' ss Seq
TAACATGTTTGTTATTACAGATC
3' ss Score
7.37
5' ss Seq
TAGGTACCC
5' ss Score
5.35
Exon sequences
Seq C1 exon
AATTTTACAAATTTGTTTGGACAGCCACTCGTCTGCCTTCTTTCTCCCACGGCATATCCAAAAGCTTTGCAAG
Seq A exon
ATCAGTCTCAGCGAGGTAGCCTCTTCACGCTCTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTGTCTGGATTGTCAAGCATGCGTAGAGGCCTGTGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGATATTGCCCAGCTACTGACCCATTCACGTTCAATAG
Seq C2 exon
ATCAGGCCTTCCTCCAGTTTTTTGGAGATGAATTTCTTCGATTGCTTCTCACAAGGTTTGTCTTCTGTTCAGCCACCATGAGGATGCACAAGGCCTTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035236-'24-22,'24-21,26-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(4.8=100)
A:
PF120703=DUF3550=FE(11.7=100)
C2:
PF120703=DUF3550=FE(6.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTACAAATTTGTTTGGACAGCCAC
R:
GAAAGGCCTTGTGCATCCTCA
Band lengths:
170-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: