GgaEX6015622 @ galGal4
Exon Skipping
Gene
ENSGALG00000001037 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr17:9555266-9556977:+
Coord C1 exon
chr17:9555266-9555338
Coord A exon
chr17:9556501-9556674
Coord C2 exon
chr17:9556877-9556977
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCTATTGATTTTTAGATC
3' ss Score
9.87
5' ss Seq
TAGGTACGT
5' ss Score
8.17
Exon sequences
Seq C1 exon
AATTTCACAAACTTATTTGGACAACCATTGGTGTGCTTGCTTTCTCCAACAGCATATCCAAAAGCGTTACAGG
Seq A exon
ATCAGTCTCAGCGGGGTAGCCTCTTCACACTCTTTCTGAACAATCCTTTAATGGCATTCCTATTTGTCTCTGGATTATCAAGCATGCGCAGAGGACTGTGGGAGAAGTGTCAAGATTACCTCAGAAAAATCAATCGAGATATTGCGCAGCTGCTGACCCACTCCCGCTCCATAG
Seq C2 exon
ATCAATCATTTCTTCAGTTTTTTGGGGATGAATTTCTTCGTTTGCTTCTAACGAGATTTATCTTCTGTTCAGCTACTATGAGGATGCACAAAATTTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001037-'27-27,'27-24,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(4.8=100)
A:
PF120703=DUF3550=FE(11.6=100)
C2:
PF120703=DUF3550=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTTGGACAACCATTGGTGTGC
R:
CCGGAAAATTTTGTGCATCCTCA
Band lengths:
162-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]