MmuEX0044120 @ mm10
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:93258966-93261774:+
Coord C1 exon
chr1:93258966-93259106
Coord A exon
chr1:93259645-93259807
Coord C2 exon
chr1:93261649-93261774
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGCCCCACCCCCAGGCA
3' ss Score
9.1
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTTAACACATTCCAAACTGTACTCATCACCGATGGCCGATTCTCCTTCACCATCTTCAACTATGAGTCCATCTTGTGGACTACCGGCACACACGCCAGCAGCGGGGGTGACACTGATGGCTTGGGAGGCATTGCAGCCCAG
Seq A exon
GCAGGTTTCAACGCAGGTGATGGGCACCGCTACTTCAACATCCCCGGGTCGCGCACAGCAGACATGGCTGAGGTGGAGACCACCACCAACGTGGGCGTGCCCGGCCGCTGGGCGTTTAGAATCGATGATGCCCAGGTGCGCGTGGGGGGCTGCGGCCATACAA
Seq C2 exon
CCTCTGTGTGCCTGGTCCTGCGTCCATGCCTCAATGGTGGCAAGTGCATTGATGACTGCGTCACGGGCAATCCCTCTTACACCTGTTCCTGTCTCGCTGGCTTCACAGGCCGGAGATGCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.055 C2=0.000
Domain overlap (PFAM):
C1:
PF061199=NIDO=PU(50.5=97.9)
A:
PF061199=NIDO=PD(47.3=78.2)
C2:
PF0000822=EGF=WD(100=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACTCATCACCGATGGCC
R:
CATCTCCGGCCTGTGAAGC
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types