RnoEX0084310 @ rn6
Exon Skipping
Gene
ENSRNOG00000023548 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:RGD Symbol;Acc:1566079]
Coordinates
chr9:100400184-100403099:+
Coord C1 exon
chr9:100400184-100400324
Coord A exon
chr9:100400831-100400993
Coord C2 exon
chr9:100402974-100403099
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGCCCCGCCCCCAGGCA
3' ss Score
9.81
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTCAACACATTCCAAACGGTGCTCATCACTGACGGCCGGTTCTCCTTCACCATCTTCAACTATGAGTCCATCCTGTGGACTACGGGCACACACGCCAGCAGTGGTGGTGATGCTGATGGCTTGGGAGGCATTGCAGCCCAG
Seq A exon
GCAGGTTTCAACGCAGGTGATGGGCACCGCTACTTCAACATCCCTGGGTCGCGCACAGCAGACATGGCTGAGGTGGAGACCACCACCAACGTGGGCGTGCCCGGGCGCTGGGCGTTTAGAATCGATGATGCCCAGGTGCGCGTGGGGGGCTGCGGCCATACAA
Seq C2 exon
CCTCTGTGTGCCTAGTCCTGCGTCCGTGCCTCAATGGTGGCAAGTGCATCGATGACTGTGTCACGGGCAATCCCTCCTACACCTGTTCCTGTCTCGCTGGCTTCACGGGGCGTAGATGCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023548-'3-4,'3-2,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.055 C2=0.000
Domain overlap (PFAM):
C1:
PF061199=NIDO=PU(50.5=97.9)
A:
PF061199=NIDO=PD(47.3=78.2)
C2:
PF0000822=EGF=WD(100=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACATTCCAAACGGTGCTCA
R:
TGAAGCCAGCGAGACAGGAA
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]