BtaEX6019580 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014132 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr3:120764601-120767864:+
Coord C1 exon
chr3:120764601-120764741
Coord A exon
chr3:120765390-120765552
Coord C2 exon
chr3:120767739-120767864
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCAAACCGCCCCCAGGCC
3' ss Score
8.09
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTCAACACGTTCCAGACGGTGCTCATCACAGACGGCACGCTCTCCTTCACCATCTTCAACTACGAGTCCATCACGTGGACCACGGGCACACACGCCAGCAGCGGGGGCAATGCCAGCGGCCTGGGGGGCATAGCGGCCCAG
Seq A exon
GCCGGCTTCAACGCGGGAGACGGGCAGCGCTACTTCAGCATCCCCGGCTCGCGCACAGCGGACATGGCGGAGGTGGAGACCACCACCAACGTGGGCGTGCCCGGGCGCTGGGCGTTCAGAATCGATGATGCCCAGGTGCGCGTGGGGGGCTGCGGCCATACAA
Seq C2 exon
CCTCCGTGTGCCAGACACTGCGTCCCTGCCTCAACGGCGGCAAGTGCATTGACGACTGCGTCACGGGCAACCCCTCCTATACCTGCTCCTGCCTCTCAGGCTTCACGGGGAGGACGTGCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014132-'2-3,'2-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF061199=NIDO=PU(50.5=97.9)
A:
PF061199=NIDO=PD(47.3=78.2)
C2:
PF0000822=EGF=WD(100=83.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGACGGTGCTCATCAC
R:
CTCCCCGTGAAGCCTGAGAG
Band lengths:
245-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]