GgaEX6045724 @ galGal3
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
NA
Coordinates
chr9:5935993-5938228:+
Coord C1 exon
chr9:5935993-5936133
Coord A exon
chr9:5936973-5937135
Coord C2 exon
chr9:5938103-5938228
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCCTTGTCCTCCCAGGCA
3' ss Score
10.71
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTAAACACATTCCAGATCGTCCTCATCACGGACGGCAAGCTCTCCTTCACCATCTTCAACTATGAGTCCATCACCTGGACCACGGGTATGCACGCCAGCAGTGGGGGGGACTTTGCTGGGCTTGGCGGCATCGCAGCGCAG
Seq A exon
GCAGGTTTTAACGCCGGTGATGGAAAGCGCTACTTCAACATCCCCGGATCCCGCACTGACGACATCGCTGACGTGGAGATGACGACAAATGTGGGTATCCCCGGGCGCTGGGTGTTCAGAATCGATGATGCCCAGGTGCAAGTGGGGGGCTGCAGCAATACAA
Seq C2 exon
CCTCCGTGTGCCTGACGCTGCGGCCCTGCCTGAACGGGGGGAAGTGCATCGAGGACTGCATCACTGGGAACCCCTCCTACACCTGCTCGTGCCTCGCGGGCTTCACAGGGAAAAGGTGCCATGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039-'4-5,'4-2,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF061199=NIDO=PU(50.5=97.9)
A:
PF061199=NIDO=PD(47.3=78.2)
C2:
PF0000822=EGF=WD(100=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATCGTCCTCATCACGGA
R:
ACATGGCACCTTTTCCCTGTG
Band lengths:
254-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]