MmuEX1008326 @ mm10
Exon Skipping
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:37802015-37805200:-
Coord C1 exon
chr2:37804869-37805200
Coord A exon
chr2:37804047-37804303
Coord C2 exon
chr2:37802015-37802273
Length
257 bp
Sequences
Splice sites
3' ss Seq
ACACCATTTTTCTTTTCAAGGAA
3' ss Score
10.16
5' ss Seq
CTGGTACAA
5' ss Score
2.41
Exon sequences
Seq C1 exon
CCTGGTAAAGCCCTTGCGACACTATGCTGTCTTCCTCTCTGAAGACTCCTCTGATGAGGAATGCCGACGGGAAGAGGCCCCCAGCACTGGCTTCACTGAAAGCCTTCTCTTCTCTGCTCCCTTTGAATGGTCTCTCTTCCTCTTTCCAGCTCCTTGGGCTCAGCCTGGTGACTCTTTGGGTGCAGTGGGGAGCATGGGGGACTGGGGCTGCTTGCTGCCATGGGGAGAAACGTTCCTGGGTGCCAACTTTCAGGGTGGCTGCCATGTCTACAGGCCTTCTCTCAGGCTCGTACTGTGCCGGCCCCACAGGGCTGTGACAGCAAAGGTATCAG
Seq A exon
GAAAAGAAGGCTTACCTTACATACAAATGGACTTCCCAGGAGCCTCAGCGATGTGCCCACAACTACCAGAGTGCCAGCTGCTGTCCACCTCACAGTCAGGGGTCCTTGTCGCCCTCCACTGTCCCCATCCTCAGCCCCTCCCAGCTCTCTGACCTTAGCAAGTTCCCAGCATCAGATCTGCTCCCTATGGCTTCATCCTGGACCTTCTAAGTCAAGGCTGCTCTGCCCCCTGCTCGTTTCCTGCTGCCAGCTCACTG
Seq C2 exon
GCCACAGCCATACCGGACATTGAAAGAATCAGACAGCGCAGAAGGTGATGAGACCGAGAGTCCAGAGCAGCTAGTTCGAGAACCCTGGGGACCTACCCCTGCTCCACCTGACCGAGCTGCCAGCATTGACCTTCTAGAAGATGTCTTCAGCAGCCTAGACGTGGAGGCACCACTGCAGCCGCTGGGCCAAGCCAAGAGCCTGGAGGATCTCCGGGCCCCCAAAGACTTGCGGGAACAGCCAGGGAGCTTTGATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392-'76-76,'76-75,77-76
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=0.609 C2=0.845
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000102787fB8660
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGCTTCACTGAAAGCCT
R:
CACCTTCTGCGCTGTCTGATT
Band lengths:
295-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types