MmuEX6020175 @ mm10
Exon Skipping
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:115967888-115971378:+
Coord C1 exon
chr5:115967888-115968085
Coord A exon
chr5:115968964-115969157
Coord C2 exon
chr5:115971243-115971378
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCAGTGCTCCTGATTTGCAGACG
3' ss Score
6.93
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GTCATCACCGACCTGGAGGAGCAGCTGAACCAGCTCACCGAGGACAACGCCGAGCTCAACAACCAAAACTTCTACCTGTCCAAACAACTCGATGAGGCTTCCGGGGCCAATGACGAGATTGTGCAGCTGCGGAGTGAGGTGGACCATCTCCGCCGTGAGATCACGGAGCGGGAGATGCAGCTCACCAGCCAGAAGCAA
Seq A exon
ACGATGGAGGCTCTGAAGACGACATGCACCATGCTGGAGGAGCAGGTCCTGGACCTGGAGGCCCTGAACGACGAGCTGCTGGAGAAGGAGCGCCAGTGGGAGGCCTGGCGGAGCGTCCTCGGCGACGAGAAGTCCCAGTTCGAGTGTCGAGTTCGAGAGCTACAGAGGATGCTGGACACCGAGAAGCAGAGCAG
Seq C2 exon
GGCTAGGGCCGATCAGCGGATCACCGAGTCGCGCCAGGTGGTGGAGTTGGCGGTGAAGGAACACAAGGCCGAGATTCTTGCTCTGCAGCAGGCTCTCAAGGAGCAGAAGCTCAAAGCCGAGAGCCTGTCGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516-'52-70,'52-61,62-70=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.154 C2=0.174
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(40.8=97.0)
A:
PF0149614=V_ATPase_I=FE(40.8=100)
C2:
PF0149614=V_ATPase_I=PD(17.2=58.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGCTCACCGAGGACAA
R:
AGCAAGAATCTCGGCCTTGTG
Band lengths:
254-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types