GgaEX1015567 @ galGal4
Exon Skipping
Gene
ENSGALG00000007354 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr15:9618563-9620046:+
Coord C1 exon
chr15:9618563-9618760
Coord A exon
chr15:9619202-9619395
Coord C2 exon
chr15:9619911-9620046
Length
194 bp
Sequences
Splice sites
3' ss Seq
ATAGGAGGATTTATTTTTAGACT
3' ss Score
0.52
5' ss Seq
CAGGTCTTT
5' ss Score
2.36
Exon sequences
Seq C1 exon
GTGATTACAGATTTGGAAGAGCAGCTGAACCAGCTCAGTGAAGACAACGCAGAACTGAACAATCAGAATTTCTTCCTGTCCAAACAACTTGATGAGGCCTCAGGGGCCAATGATGAAGTTGTCCAGTTGCGGAGTGAAGTTGACCATCTCCGTCGAGAGATCACTGAGCGAGAGATGCAGCTTACCAGTCAGAAACAA
Seq A exon
ACTATGGAGGCCTTGAAGACAACATGTACAATGCTGGAAGAGCAAGTAATGGACTTGGAGGCCCTGAACGATGAACTCTTGGAGAAAGAGCGTCAGTGGGAAGCATGGAGAAATGTTCTGGGGGATGAGAAGTCTCAGTTTGAATGTCGTGTCAGAGAGTTGCAGAGGATGCTGGATACTGAGAAACAGAGCAG
Seq C2 exon
AGTGAGAGCAGATCAGCGTATTACTGAATCTCGCCAGGTGGTAGAACTAGCTGTCAAAGAACACAAGGCAGAGATTCTAGCCCTCCAGCAAGCACTAAAAGAACAAAAACTCAAAGCTGAGAGCCTTTCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=0.123 C2=0.130
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(40.4=95.5)
A:
PF0149614=V_ATPase_I=FE(41.0=100)
C2:
PF0149614=V_ATPase_I=PD(17.3=58.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGTGAAGACAACGCAG
R:
TGGAGGGCTAGAATCTCTGCC
Band lengths:
254-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]