MmuEX6020175 @ mm9
Exon Skipping
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:116417897-116421387:+
Coord C1 exon
chr5:116417897-116418094
Coord A exon
chr5:116418973-116419166
Coord C2 exon
chr5:116421252-116421387
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCAGTGCTCCTGATTTGCAGACG
3' ss Score
6.93
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GTCATCACCGACCTGGAGGAGCAGCTGAACCAGCTCACCGAGGACAACGCCGAGCTCAACAACCAAAACTTCTACCTGTCCAAACAACTCGATGAGGCTTCCGGGGCCAATGACGAGATTGTGCAGCTGCGGAGTGAGGTGGACCATCTCCGCCGTGAGATCACGGAGCGGGAGATGCAGCTCACCAGCCAGAAGCAA
Seq A exon
ACGATGGAGGCTCTGAAGACGACATGCACCATGCTGGAGGAGCAGGTCCTGGACCTGGAGGCCCTGAACGACGAGCTGCTGGAGAAGGAGCGCCAGTGGGAGGCCTGGCGGAGCGTCCTCGGCGACGAGAAGTCCCAGTTCGAGTGTCGAGTTCGAGAGCTACAGAGGATGCTGGACACCGAGAAGCAGAGCAG
Seq C2 exon
GGCTAGGGCCGATCAGCGGATCACCGAGTCGCGCCAGGTGGTGGAGTTGGCGGTGAAGGAACACAAGGCCGAGATTCTTGCTCTGCAGCAGGCTCTCAAGGAGCAGAAGCTCAAAGCCGAGAGCCTGTCGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516-'40-41,'40-40,42-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.156 C2=0.174
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(40.8=97.0)
A:
PF0149614=V_ATPase_I=FE(40.8=100)
C2:
PF0149614=V_ATPase_I=PD(17.2=58.7)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGCTCACCGAGGACAA
R:
AGCAAGAATCTCGGCCTTGTG
Band lengths:
254-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: