GgaEX1015567 @ galGal3
Exon Skipping
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9884916-9886399:+
Coord C1 exon
chr15:9884916-9885113
Coord A exon
chr15:9885555-9885748
Coord C2 exon
chr15:9886264-9886399
Length
194 bp
Sequences
Splice sites
3' ss Seq
ATAGGAGGATTTATTTTTAGACT
3' ss Score
0.52
5' ss Seq
CAGGTCTTT
5' ss Score
2.36
Exon sequences
Seq C1 exon
GTGATTACAGATTTGGAAGAGCAGCTGAACCAGCTCAGTGAAGACAACGCAGAACTGAACAATCAGAATTTCTTCCTGTCCAAACAACTTGATGAGGCCTCAGGGGCCAATGATGAAGTTGTCCAGTTGCGGAGTGAAGTTGACCATCTCCGTCGAGAGATCACTGAGCGAGAGATGCAGCTTACCAGTCAGAAACAA
Seq A exon
ACTATGGAGGCCTTGAAGACAACATGTACAATGCTGGAAGAGCAAGTAATGGACTTGGAGGCCCTGAACGATGAACTCTTGGAGAAAGAGCGTCAGTGGGAAGCATGGAGAAATGTTCTGGGGGATGAGAAGTCTCAGTTTGAATGTCGTGTCAGAGAGTTGCAGAGGATGCTGGATACTGAGAAACAGAGCAG
Seq C2 exon
AGTGAGAGCAGATCAGCGTATTACTGAATCTCGCCAGGTGGTAGAACTAGCTGTCAAAGAACACAAGGCAGAGATTCTAGCCCTCCAGCAAGCACTAAAAGAACAAAAACTCAAAGCTGAGAGCCTTTCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=0.123 C2=0.174
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(39.6=92.4)
A:
PF0149614=V_ATPase_I=FE(41.6=100)
C2:
PF0149614=V_ATPase_I=PD(17.5=58.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGTGAAGACAACGCAG
R:
TGGAGGGCTAGAATCTCTGCC
Band lengths:
254-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]