RnoEX6064786 @ rn6
Exon Skipping
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46369066-46371881:-
Coord C1 exon
chr12:46371684-46371881
Coord A exon
chr12:46370847-46371040
Coord C2 exon
chr12:46369066-46369201
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCAGTGCTGCTGACTTGCAGACA
3' ss Score
6.62
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GTCATCACCGACCTGGAGGAGCAGCTGAACCAGCTCACCGAGGACAACGCCGAGCTCAACAACCAAAACTTCTACCTGTCCAAACAACTCGATGAGGCTTCGGGTGCCAACGATGAGATTGTGCAGCTGCGAAGCGAGGTGGACCATCTCCGCCGTGAGATCACGGAGCGGGAGATGCAGCTCACCAGCCAGAAGCAA
Seq A exon
ACAATGGAGGCTCTGAAGACGACCTGCACCATGCTGGAGGAGCAGGTCATGGACCTGGAGGCCCTGAACGACGAGCTGCTGGAGAAGGAGCGCCAGTGGGAGGCCTGGAGGAGCGTCCTCGGGGACGAGAAGTCTCAGTTTGAGTGTCGAGTTCGAGAGCTACAGAGGATGCTGGACACCGAGAAGCAGAGCAG
Seq C2 exon
GGCTAGAGCTGATCAGCGGATCACGGAGTCTCGCCAGGTGGTGGAGCTGGCAGTGAAGGAGCACAAAGCCGAGATTCTCGCGCTGCAGCAGGCTCTCAAAGAGCAGAAGCTGAAAGCTGAGAGCCTGTCGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143-'51-40,'51-39,53-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.185 C2=0.185
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(40.8=97.0)
A:
PF0149614=V_ATPase_I=FE(40.8=100)
C2:
PF0149614=V_ATPase_I=PD(17.2=58.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACTCGATGAGGCTTCGG
R:
CGACAGGCTCTCAGCTTTCAG
Band lengths:
246-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]